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RITA1 RBPJ interacting and tubulin associated 1 [ Homo sapiens (human) ]

Gene ID: 84934, updated on 7-Aug-2014
Official Symbol
RITA1provided by HGNC
Official Full Name
RBPJ interacting and tubulin associated 1provided by HGNC
Primary source
HGNC:25925
Locus tag
PSEC0043
See related
Ensembl:ENSG00000139405; HPRD:08606; Vega:OTTHUMG00000169643
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RITA; C12orf52
See RITA1 in Epigenomics, MapViewer
Location:
12q24.13
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 12 NC_000012.12 (113185526..113192368)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (113623342..113630169)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 1 (GAP1 like) Neighboring gene coiled-coil domain containing 42B Neighboring gene microRNA 7106 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 Neighboring gene IQ motif containing D Neighboring gene two pore segment channel 1 Neighboring gene microRNA 6762

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ14827

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
 
tubulin binding IDA
Inferred from Direct Assay
more info
 
Process Evidence Code Pubs
Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 
negative regulation of Notch signaling pathway IDA
Inferred from Direct Assay
more info
 
negative regulation of transcription from RNA polymerase II promoter TAS
Traceable Author Statement
more info
 
neurogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
nuclear export IDA
Inferred from Direct Assay
more info
 
Component Evidence Code Pubs
centrosome IDA
Inferred from Direct Assay
more info
 
cytoplasm IDA
Inferred from Direct Assay
more info
 
nucleus IDA
Inferred from Direct Assay
more info
 
Preferred Names
RBPJ-interacting and tubulin-associated protein 1
Names
RBPJ-interacting and tubulin-associated protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286215.1NP_001273144.1  RBPJ-interacting and tubulin-associated protein 1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' region and initiates translation at an alternate upstream start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is longer than isoform 1.
    Source sequence(s)
    AA594422, AK027733, BP212183, BX366456, DA207985
    Consensus CDS
    CCDS66473.1
    UniProtKB/TrEMBL
    F8VRG5
    UniProtKB/Swiss-Prot
    Q96K30
    Conserved Domains (1) summary
    PHA03247
    Location:65291
    Blast Score: 90
    PHA03247; large tegument protein UL36; Provisional
  2. NM_032848.2NP_116237.1  RBPJ-interacting and tubulin-associated protein 1 isoform 1

    See proteins identical to NP_116237.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the shorter isoform (1).
    Source sequence(s)
    AA594422, AK027733, BP212183, DA207985
    Consensus CDS
    CCDS9166.1
    UniProtKB/Swiss-Prot
    Q96K30
    Related
    ENSP00000449841, OTTHUMP00000241776, ENST00000548278, OTTHUMT00000405239
    Conserved Domains (1) summary
    PHA03247
    Location:41267
    Blast Score: 89
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000012.12 

    Range
    113185526..113192368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005253972.1XP_005254029.1  

    See proteins identical to XP_005254029.1

    UniProtKB/Swiss-Prot
    Q96K30
    Related
    ENSP00000448289, OTTHUMP00000241775, ENST00000549621, OTTHUMT00000405238
    Conserved Domains (1) summary
    PHA03247
    Location:41267
    Blast Score: 89
    PHA03247; large tegument protein UL36; Provisional

Alternate HuRef

Genomic

  1. AC_000144.1 

    Range
    110636045..110642887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018923.2 

    Range
    113591596..113598455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)