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    OFD1 oral-facial-digital syndrome 1 [ Homo sapiens (human) ]

    Gene ID: 8481, updated on 9-Jun-2013
    Official Symbol
    OFD1provided by HGNC
    Official Full Name
    oral-facial-digital syndrome 1provided by HGNC
    Primary source
    HGNC:2567
    See related
    Ensembl:ENSG00000046651; HPRD:02162; MIM:300170; Vega:OTTHUMG00000021159
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RP23; 71-7A; SGBS2; CXorf5; JBTS10
    Summary
    This gene is located on the X chromosome and encodes a centrosomal protein. A knockout mouse model has been used to study the effect of mutations in this gene. The mouse gene is also located on the X chromosome, however, unlike the human gene it is not subject to X inactivation. Mutations in this gene are associated with oral-facial-digital syndrome type I and Simpson-Golabi-Behmel syndrome type 2. Many pseudogenes have been identified; a single pseudogene is found on chromosome 5 while as many as fifteen have been found on the Y chromosome. Alternatively spliced transcripts have been described for this gene but the biological validity of these transcripts has not been determined. [provided by RefSeq, Jul 2008]
    Location :
    Xp22
    Sequence :
    Chromosome: X; NC_000023.10 (13752832..13787480)
    See OFD1 in Epigenomics, MapViewer

    Chromosome X - NC_000023.10Genomic Context describing neighboring genes Neighboring gene RAB9A, member RAS oncogene family Neighboring gene trafficking protein particle complex 2 Neighboring gene glycoprotein M6B Neighboring gene gem (nuclear organelle) associated protein 8

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Joubert syndrome 10

    Summary from GeneReviews: Joubert Syndrome and Related Disorders Go to GeneReviews

    Disease Characteristics
    Classic Joubert syndrome is characterized by three primary findings: A distinctive cerebellar and brain stem malformation called the molar tooth sign (MTS) . Hypotonia. Developmental delays . Often these findings are accompanied by episodic tachypnea or apnea and/or atypical eye movements. In general, the breathing abnormalities improve with age, truncal ataxia develops over time, and acquisition of gross motor milestones is delayed. Cognitive abilities are variable, ranging from severe intellectual disability to normal. The designation Joubert syndrome and related disorders (JSRD) is used to describe individuals with JS who have additional findings including retinal dystrophy, renal disease, ocular colobomas, occipital encephalocele, hepatic fibrosis, polydactyly, oral hamartomas, and endocrine abnormalities. Both intra- and interfamilial variation are seen.
    Diagnosis Testing
    The diagnosis of JSRD is based on the presence of characteristic clinical features and magnetic resonance images (MRI) through the junction of the midbrain and pons (isthmus region) that resemble a molar tooth. To date biallelic mutations in one of the following 19 genes are identified in about 50% of individuals with a JSRD: NPHP1, CEP290, AHI1, TMEM67 (MKS3), RPGRIP1L, CC2D2A, ARL13B, INPP5E, OFD1, TMEM216, KIF7, TCTN1, TCTN2, TMEM237, CEP41, TMEM138, C5orf42, TMEM231, and TCTN3; the other genes in which mutations are causative are unknown. To date, no individuals with JSRD and biallelic mutations in TTC21B have been reported.
    Genetic Counseling
    JSRDs are predominantly inherited in an autosomal recessive manner. JSRD caused by mutation of OFD1 is inherited in an X-linked manner. Digenic inheritance has been reported. For autosomal recessive inheritance: at conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk family members and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations have been identified in the family. For pregnancies at known increased risk for Joubert syndrome prenatal diagnosis by ultrasound examination with or without fetal MRI has been successful.
    References

    Oral-facial-digital syndrome

    Summary from GeneReviews: Oral-Facial-Digital Syndrome Type I Go to GeneReviews

    Disease Characteristics
    Oral-facial-digital syndrome type I (OFD1) is associated with dysfunction of primary cilia and is characterized by the following abnormalities: Oral (lobed tongue, hamartomas or lipomas of the tongue, cleft of the hard or soft palate, accessory gingival frenulae, hypodontia, and other dental abnormalities). Facial (widely spaced eyes or telecanthus, hypoplasia of the alae nasi, median cleft or pseudocleft upper lip, micrognathia) . Digital (brachydactyly, syndactyly of varying degrees, and clinodactyly of the fifth finger; duplicated hallux [great toe]; preaxial or postaxial polydactyly of the hands). Brain (intracerebral cysts, corpus callosum agenesis, cerebellar agenesis with or without Dandy-Walker malformation) . Kidney (polycystic kidney disease). As many as 50% of individuals with OFD1 have some degree of intellectual disability, which is usually mild. Almost all affected individuals are female. However, males with OFD1 have been described, mostly as malformed fetuses delivered by women with OFD1.
    Diagnosis Testing
    The diagnosis of OFD1 is established at birth in some infants on the basis of characteristic oral, facial, and digital anomalies; in other instances, the diagnosis is suspected only after polycystic kidney disease is identified in later childhood or adulthood. OFD1 is the only gene in which mutations are known to cause oral-facial-digital syndrome type I.
    Genetic Counseling
    OFD1 is inherited in an X-linked dominant manner. Approximately 75% of affected individuals are simplex cases (i.e., with no family history of OFD1). A female proband with OFD1 may have the disorder as the result of a de novo gene mutation; the proportion of cases caused by de novo mutations is unknown. The risk that the unaffected mother of an affected female who is a simplex case will give birth to another female with OFD1 is less than 1%. At conception, the risk to the offspring of females with OFD1 of inheriting the disease-causing OFD1 allele is 50%; however, most male conceptuses with the disease-causing allele miscarry. Thus, at delivery the expected sex ratio of offspring is: 33% unaffected females; 33% affected females; 33% unaffected males. Prenatal diagnosis for pregnancies at increased risk is possible if the disease-causing mutation in the family is known. Prenatal ultrasound examination may detect structural brain malformations and/or duplication of the hallux.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    O75665 KIAA1128 CCSER2    HPRD  PubMed  
    O75665 P56537 EIF6    HPRD  PubMed  
    O75665 Q5JY77 GPRASP1    HPRD  PubMed  
    O75665 Q9P2H0 KIAA1377    HPRD  PubMed  
    O75665 Q9Y383 LUC7L2    HPRD  PubMed  
    BioGRID:114055 BioGRID:119968 CCSER2    BioGRID  PubMed Two-hybrid 
    BioGRID:114055 BioGRID:109898 EIF6    BioGRID  PubMed Two-hybrid 
    BioGRID:114055 BioGRID:115086 GPRASP1    BioGRID  PubMed Two-hybrid 
    BioGRID:114055 BioGRID:121617 KIAA1377    BioGRID  PubMed Two-hybrid 
    BioGRID:114055 BioGRID:119646 LUC7L2    BioGRID  PubMed Two-hybrid 
    BioGRID:114055 BioGRID:118963 NME7    BioGRID  PubMed Two-hybrid 
    BioGRID:114055 BioGRID:114055 OFD1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114055 BioGRID:115252 PAN2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114055 BioGRID:111362 PLK1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:114055 BioGRID:114166 RUVBL1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:114055 BioGRID:113900 TRRAP    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114055 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • MGC117039, MGC117040

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    alpha-tubulin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    gamma-tubulin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    G2/M transition of mitotic cell cycle TAS
    Traceable Author Statement
    more info
     
    NOT centriole replication ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cilium axoneme assembly IEA
    Inferred from Electronic Annotation
    more info
     
    cilium morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    epithelial cilium movement involved in determination of left/right asymmetry ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    NOT mitosis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    mitotic cell cycle TAS
    Traceable Author Statement
    more info
     
    NOT spindle assembly involved in mitosis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    centriole IDA
    Inferred from Direct Assay
    more info
     
    centrosome IDA
    Inferred from Direct Assay
    more info
     
    cilium IDA
    Inferred from Direct Assay
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    microtubule basal body IDA
    Inferred from Direct Assay
    more info
     
    microtubule cytoskeleton IDA
    Inferred from Direct Assay
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    oral-facial-digital syndrome 1 protein
    Names
    oral-facial-digital syndrome 1 protein
    protein 71-7A
    retinitis pigmentosa 23 (X-linked recessive)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008872.1 RefSeqGene

      Range
      5001..39649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_003611.2NP_003602.1  oral-facial-digital syndrome 1 protein

      Status: REVIEWED

      Source sequence(s)
      AC003037, CB134304, Y15164
      Consensus CDS
      CCDS14157.1
      UniProtKB/TrEMBL
      E9KL37
      UniProtKB/Swiss-Prot
      O75665
      Related
      ENSP00000344314, OTTHUMP00000022940, ENST00000340096, OTTHUMT00000055808
      Conserved Domains (1) summary
      PRK03918
      Location:264404
      Blast Score: 95
      PRK03918; chromosome segregation protein; Provisional

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000023.10 Reference GRCh37.p10 Primary Assembly

      Range
      13752832..13787480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000155.1 Alternate HuRef

      Range
      11510937..11544940
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018934.1 Alternate CHM1_1.0

      Range
      13668378..13703024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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