RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001256074.1 → NP_001243003.1 collagen alpha-1(XXV) chain isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has multiple differences in the coding region but maintains the reading frame, and also differs in the 5' and 3' UTRs, compared to variant 1. The resulting isoform (3) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC004051, AC097473, BC030649
- UniProtKB/TrEMBL
-
A8MWQ5
- Conserved Domains (1) summary
-
- pfam01391
Location:547 – 606
Blast Score: 94
- Collagen; Collagen triple helix repeat (20 copies)
-
NM_032518.2 → NP_115907.2 collagen alpha-1(XXV) chain isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks three 3' exons but includes an alternate 3' exon, resulting in a novel 3' coding region and 3' UTR, compared to variant 1. It encodes isoform 2 which is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AF293341, BC030649
- Consensus CDS
-
CCDS43259.1
- UniProtKB/Swiss-Prot
-
Q9BXS0
- Related
- ENSP00000382077, OTTHUMP00000196082, ENST00000399126, OTTHUMT00000315939
- Conserved Domains (1) summary
-
- pfam01391
Location:553 – 603
Blast Score: 94
- Collagen; Collagen triple helix repeat (20 copies)
-
NM_198721.2 → NP_942014.1 collagen alpha-1(XXV) chain isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC097473, AF293340, AF293341, BC030649
- Consensus CDS
-
CCDS43258.1
- UniProtKB/Swiss-Prot
-
Q9BXS0
- Related
- ENSP00000382083, OTTHUMP00000196081, ENST00000399132, OTTHUMT00000315938
- Conserved Domains (1) summary
-
- pfam01391
Location:553 – 603
Blast Score: 90
- Collagen; Collagen triple helix repeat (20 copies)
RNA
-
NR_045756.2 RNA Sequence
- Description
- Transcript Variant: This variant (4) contains an alternate 5' exon, lacks three exons and uses an alternate splice site in the central region, and uses alternate exon structure in the 3' region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC004051, AC097473, BC036669
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000004.11 Reference GRCh37.p5 Primary Assembly
- Range
- 109734972..110223799, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000136.1 Alternate HuRef
- Range
- 105467332..105956593, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)