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    Namu_1502 ribonuclease, Rne/Rng family [ Nakamurella multipartita DSM 44233 ]

    Gene ID: 8447100, updated on 25-May-2013
    Gene symbol
    Namu_1502
    Gene description
    ribonuclease, Rne/Rng family
    Locus tag
    Namu_1502
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Nakamurella multipartita DSM 44233 (strain: DSM 44233)
    Lineage
    Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Nakamurellaceae; Nakamurella
    Sequence :
    NC_013235.1 (1657549..1660791)

    NC_013235.1Genomic Context describing neighboring genes Neighboring gene N-acetyltransferase GCN5 Neighboring gene cyclase family protein Neighboring gene hypothetical protein Neighboring gene 50S ribosomal protein L27 Neighboring gene 50S ribosomal protein L21

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome sequence of Nakamurella multipartita type strain (Y-104). Tice H, et al. Stand Genomic Sci, 2010 Mar 30. PMID 21304699.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    • RNA degradation, organism-specific biosystem (from KEGG)
      RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
    • RNA degradation, conserved biosystem (from KEGG)
      RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
    Names
    ribonuclease, Rne/Rng family
    YP_003200890.1
    • KEGG: gme:Gmet_3192 ribonuclease G~TIGRFAM: ribonuclease, Rne/Rng family~PFAM: translation initiation factor IF-2 domain protein; RNA binding S1 domain protein~SMART: RNA binding S1 domain protein

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013235.1

      Range
      1657549..1660791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_003200890.1 ribonuclease, Rne/Rng family [Nakamurella multipartita DSM 44233]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C8XF15
      Conserved Domains (3) summary
      pfam04760
      Location:13 – 62
      Blast Score: 87
      IF2_N; Translation initiation factor IF-2, N-terminal region
      TIGR00757
      Location:380 – 781
      Blast Score: 1208
      RNaseEG; ribonuclease, Rne/Rng family
      cd04453
      Location:398 – 487
      Blast Score: 282
      S1_RNase_E; S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and ...
    Nucleotide Protein
    Heading Accession and Version
    genomic CP001737.1 ACV77901.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    EEN21011.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

      Related sites

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