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MSL6 mechanosensitive channel of small conductance-like 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844197, updated on 15-Feb-2024

Summary

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Gene symbol
MSL6
Gene description
mechanosensitive channel of small conductance-like 6
Primary source
Araport:AT1G78610
Locus tag
AT1G78610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
mechanosensitive channel of small conductance-like 6; T30F21.6; T30F21_6
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (29568961..29572572, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAD(H) kinase 3 Neighboring gene light-regulated zinc finger protein 1 Neighboring gene integral membrane protein (Protein of unknown function DUF92, transmembrane) Neighboring gene Ribosomal protein L13 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_106508.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
mechanosensitive channel of small conductance-like 6
NP_177982.1
  • mechanosensitive channel of small conductance-like 6 (MSL6); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1); Has 3617 Blast hits to 3602 proteins in 1077 species: Archae - 172; Bacteria - 2574; Metazoa - 1; Fungi - 205; Plants - 217; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29568961..29572572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106508.3 → NP_177982.1  mechanosensitive channel of small conductance-like 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177982.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SYM1
    UniProtKB/TrEMBL
    A0A178WIR7, A0A5S9WVI4
    Conserved Domains (1) summary
    cl39057
    Location:661 → 819
    MS_channel; Mechanosensitive ion channel
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SYM1.1

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