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ZBED3 zinc finger BED-type containing 3 [ Homo sapiens (human) ]

Gene ID: 84327, updated on 8-May-2016
Official Symbol
ZBED3provided by HGNC
Official Full Name
zinc finger BED-type containing 3provided by HGNC
Primary source
HGNC:HGNC:20711
See related
Ensembl:ENSG00000132846 HPRD:15687; MIM:615250
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
Location:
5q13.3
Exon count:
3
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 5 NC_000005.10 (77076707..77087205, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (76372532..76383030, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene corticotropin releasing hormone binding protein Neighboring gene uncharacterized LOC105379043 Neighboring gene angiogenic factor with G-patch and FHA domains 1 Neighboring gene small nucleolar RNA, H/ACA box 47 Neighboring gene ZBED3 antisense RNA 1 Neighboring gene uncharacterized LOC105379044 Neighboring gene high mobility group box 1 pseudogene 35

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NHGRI GWAS Catalog

Description
Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Homology

Clone Names

  • MGC15435

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
negative regulation of protein phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of canonical Wnt signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of protein targeting to mitochondrion IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter ISS
Inferred from Sequence or Structural Similarity
more info
 
protein stabilization ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cytosol ISS
Inferred from Sequence or Structural Similarity
more info
 
membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
Preferred Names
zinc finger BED domain-containing protein 3
Names
2610005H11Rik
axin-interacting protein
zinc finger, BED domain containing 3
zinc finger, BED-type containing 3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032367.2NP_115743.1  zinc finger BED domain-containing protein 3

    See identical proteins and their annotated locations for NP_115743.1

    Status: PROVISIONAL

    Source sequence(s)
    BC007239
    Consensus CDS
    CCDS4036.1
    UniProtKB/Swiss-Prot
    Q96IU2
    Related
    ENSP00000255198, OTTHUMP00000128326, ENST00000255198, OTTHUMT00000219970
    Conserved Domains (1) summary
    smart00614
    Location:47100
    ZnF_BED; BED zinc finger

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p2 Primary Assembly

    Range
    77076707..77087205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018916.2 Alternate CHM1_1.1

    Range
    75805933..75816430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)