Format

Send to:

Choose Destination

CMSS1 cms1 ribosomal small subunit homolog (yeast) [ Homo sapiens (human) ]

Gene ID: 84319, updated on 26-May-2016
Official Symbol
CMSS1provided by HGNC
Official Full Name
cms1 ribosomal small subunit homolog (yeast)provided by HGNC
Primary source
HGNC:HGNC:28666
See related
Ensembl:ENSG00000184220 HPRD:11351; Vega:OTTHUMG00000159054
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C3orf26
Orthologs
Location:
3q12.1
Exon count:
11
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 3 NC_000003.12 (99817834..100178632)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (99536678..99897476)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374008 Neighboring gene collagen type VIII alpha 1 Neighboring gene uncharacterized LOC105374011 Neighboring gene uncharacterized LOC101929357 Neighboring gene filamin A interacting protein 1-like Neighboring gene transmembrane protein 258 pseudogene Neighboring gene microRNA 3921 Neighboring gene uncharacterized LOC105374010 Neighboring gene uncharacterized LOC105374009 Neighboring gene transmembrane protein 30C Neighboring gene dual specificity phosphatase 12 pseudogene 1

NHGRI GWAS Catalog

Description
Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.
NHGRI GWA Catalog
Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Potential readthrough

Included gene: COL8A1

Homology

Clone Names

  • MGC4308

Gene Ontology Provided by GOA

Function Evidence Code Pubs
poly(A) RNA binding IDA
Inferred from Direct Assay
more info
PubMed 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001167924.1NP_001161396.1  protein CMSS1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC129803, AK300704
    Consensus CDS
    CCDS54618.1
    UniProtKB/Swiss-Prot
    Q9BQ75
    Related
    ENSP00000419161, OTTHUMP00000213942, ENST00000489081, OTTHUMT00000353062
    Conserved Domains (1) summary
    cl21455
    Location:27243
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
  2. NM_032359.3NP_115735.2  protein CMSS1 isoform 1

    See identical proteins and their annotated locations for NP_115735.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC069222, AC129803, AK312483, BC006512
    Consensus CDS
    CCDS2935.1
    UniProtKB/Swiss-Prot
    Q9BQ75
    Related
    ENSP00000410396, OTTHUMP00000213941, ENST00000421999, OTTHUMT00000353060
    Conserved Domains (1) summary
    cl21455
    Location:45261
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p2 Primary Assembly

    Range
    99817834..100178632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018914.2 Alternate CHM1_1.1

    Range
    99499704..99860531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)