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    ARL6 ADP-ribosylation factor-like 6 [ Homo sapiens (human) ]

    Gene ID: 84100, updated on 5-May-2013
    Official Symbol
    ARL6provided by HGNC
    Official Full Name
    ADP-ribosylation factor-like 6provided by HGNC
    Primary source
    HGNC:13210
    See related
    Ensembl:ENSG00000113966; HPRD:10588; MIM:608845; Vega:OTTHUMG00000159189
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BBS3; RP55
    Summary
    The protein encoded by this gene belongs to the ARF family of GTP-binding proteins. ARF proteins are important regulators of cellular traffic and are the founding members of an expanding family of homologous proteins and genomic sequences. They depart from other small GTP-binding proteins by a unique structural device that implements front-back communication from the N-terminus to the nucleotide-binding site. Studies of the mouse ortholog of this protein suggest an involvement in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. Alternative splicing occurs at this locus and two transcript variants encoding the same protein have been described. [provided by RefSeq, Jul 2008]
    Location :
    3q11.2
    Sequence :
    Chromosome: 3; NC_000003.11 (97483595..97517373)
    See ARL6 in Epigenomics, MapViewer

    Chromosome 3 - NC_000003.11Genomic Context describing neighboring genes Neighboring gene CDV3 homolog (mouse) pseudogene 1 Neighboring gene EPH receptor A6 Neighboring gene beta-gamma crystallin domain containing 3 Neighboring gene MYC induced nuclear antigen Neighboring gene gamma-aminobutyric acid (GABA) A receptor, rho 3

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Bardet-Biedl syndrome

    Summary from GeneReviews: Bardet-Biedl Syndrome Go to GeneReviews

    Disease Characteristics
    Bardet-Biedl syndrome (BBS) is characterized by rod-cone dystrophy (>90%), truncal obesity (72%), postaxial polydactyly, cognitive impairment, male hypogonadotrophic hypogonadism, complex female genitourinary malformations, and renal abnormalities. The visual prognosis for children with BBS is poor. Night blindness is usually evident by age seven to eight years; the mean age of legal blindness is 15.5 years. Birth weight is usually normal, but significant weight gain begins within the first year and becomes a lifelong issue for most individuals. A majority of individuals have significant learning difficulties, but only a minority have severe impairment on IQ testing. Renal disease is a major cause of morbidity and mortality.
    Diagnosis Testing
    The diagnosis of BBS is established by clinical findings. Fourteen genes are known to be associated with BBS: BBS1, BBS2, ARL6 (BBS3), BBS4, BBS5, MKKS (BBS6), BBS7, TTC8 (BBS8), BBS9, BBS10, TRIM32 (BBS11), BBS12, MKS1 (BBS13), and CEP290 (BBS14). Mutations in WDPCP and SDCCAG8 may be associated with BBS15 and BBS16, respectively. Molecular genetic testing is available on a clinical basis for all 14 known BBS-related genes and for WDPCP, mutations in which may be associated with BBS.
    Genetic Counseling
    BBS is typically inherited in an autosomal recessive manner. Both interfamilial and intrafamilial phenotypic variability exists. In some families, mutations in more than one BBS locus may result in a clinical phenotype of BBS. However, such families are difficult to identify and by previous estimations may account for less than 10% of all BBS. It is thus prudent to use the following autosomal recessive risk figures when providing genetic counseling: at conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing is possible if the disease-causing mutations in a family are known. Prenatal diagnosis using second-trimester ultrasound examination to detect anomalies associated with BBS such as postaxial polydactyly and renal cysts has been reported. Few laboratories offering molecular genetic testing for prenatal diagnosis of BBS are listed in the GeneTests(TM) Laboratory Directory; however, for pregnancies at increased risk in families in which the disease-causing mutations have been identified, prenatal testing may be available through laboratories offering custom prenatal testing.
    References

    Bardet-Biedl syndrome 3

    Summary from GeneReviews: Bardet-Biedl Syndrome Go to GeneReviews

    Disease Characteristics
    Bardet-Biedl syndrome (BBS) is characterized by rod-cone dystrophy (>90%), truncal obesity (72%), postaxial polydactyly, cognitive impairment, male hypogonadotrophic hypogonadism, complex female genitourinary malformations, and renal abnormalities. The visual prognosis for children with BBS is poor. Night blindness is usually evident by age seven to eight years; the mean age of legal blindness is 15.5 years. Birth weight is usually normal, but significant weight gain begins within the first year and becomes a lifelong issue for most individuals. A majority of individuals have significant learning difficulties, but only a minority have severe impairment on IQ testing. Renal disease is a major cause of morbidity and mortality.
    Diagnosis Testing
    The diagnosis of BBS is established by clinical findings. Fourteen genes are known to be associated with BBS: BBS1, BBS2, ARL6 (BBS3), BBS4, BBS5, MKKS (BBS6), BBS7, TTC8 (BBS8), BBS9, BBS10, TRIM32 (BBS11), BBS12, MKS1 (BBS13), and CEP290 (BBS14). Mutations in WDPCP and SDCCAG8 may be associated with BBS15 and BBS16, respectively. Molecular genetic testing is available on a clinical basis for all 14 known BBS-related genes and for WDPCP, mutations in which may be associated with BBS.
    Genetic Counseling
    BBS is typically inherited in an autosomal recessive manner. Both interfamilial and intrafamilial phenotypic variability exists. In some families, mutations in more than one BBS locus may result in a clinical phenotype of BBS. However, such families are difficult to identify and by previous estimations may account for less than 10% of all BBS. It is thus prudent to use the following autosomal recessive risk figures when providing genetic counseling: at conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing is possible if the disease-causing mutations in a family are known. Prenatal diagnosis using second-trimester ultrasound examination to detect anomalies associated with BBS such as postaxial polydactyly and renal cysts has been reported. Few laboratories offering molecular genetic testing for prenatal diagnosis of BBS are listed in the GeneTests(TM) Laboratory Directory; however, for pregnancies at increased risk in families in which the disease-causing mutations have been identified, prenatal testing may be available through laboratories offering custom prenatal testing.
    References

    Retinitis pigmentosa

    Summary from GeneReviews: Retinitis Pigmentosa Overview Go to GeneReviews

    Disease Characteristics
    Retinitis pigmentosa (RP) is a group of inherited disorders in which abnormalities of the photoreceptors (rods and cones) or the retinal pigment epithelium (RPE) of the retina lead to progressive visual loss. Affected individuals first experience defective dark adaptation or "night blindness," followed by constriction of peripheral visual fields and, eventually, loss of central vision late in the course of the disease.
    Diagnosis Testing
    The diagnosis of RP relies on documentation of progressive loss in photoreceptor function by electroretinography (ERG) and visual field testing. Mutations in more than 50 different genes or loci are known to cause nonsyndromic RP. Molecular genetic testing is available on a clinical basis for many RP- related genes. For all other genes, molecular genetic testing is available on a research basis only.
    Genetic Counseling
    The mode of inheritance of RP is determined by family history and, in some instances, by molecular genetic testing. RP can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Females with an X-linked RP mutation may be unaffected or may show clinical symptoms. Such affected females are usually (but not always) less severely affected than males of the same age. Some digenic and mitochondrial forms have also been described. Genetic counseling depends on an accurate diagnosis, determination of the mode of inheritance in each family, and results of molecular genetic testing.
    References

    Retinitis pigmentosa 55

    Summary from GeneReviews: Retinitis Pigmentosa Overview Go to GeneReviews

    Disease Characteristics
    Retinitis pigmentosa (RP) is a group of inherited disorders in which abnormalities of the photoreceptors (rods and cones) or the retinal pigment epithelium (RPE) of the retina lead to progressive visual loss. Affected individuals first experience defective dark adaptation or "night blindness," followed by constriction of peripheral visual fields and, eventually, loss of central vision late in the course of the disease.
    Diagnosis Testing
    The diagnosis of RP relies on documentation of progressive loss in photoreceptor function by electroretinography (ERG) and visual field testing. Mutations in more than 50 different genes or loci are known to cause nonsyndromic RP. Molecular genetic testing is available on a clinical basis for many RP- related genes. For all other genes, molecular genetic testing is available on a research basis only.
    Genetic Counseling
    The mode of inheritance of RP is determined by family history and, in some instances, by molecular genetic testing. RP can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Females with an X-linked RP mutation may be unaffected or may show clinical symptoms. Such affected females are usually (but not always) less severely affected than males of the same age. Some digenic and mitochondrial forms have also been described. Genetic counseling depends on an accurate diagnosis, determination of the mode of inheritance in each family, and results of molecular genetic testing.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q9H0F7 Q9H0F7 ARL6    HPRD  PubMed  
    Q9H0F7 Q15041 ARL6IP1    HPRD  PubMed  
    Q9H0F7 ARL6IP4 ARL6IP4    HPRD  PubMed  
    Q9H0F7 O75915 ARL6IP5    HPRD  PubMed  
    Q9H0F7 ADP ribosylation like factor 6 interacting protein 6 ARL6IP6    HPRD  PubMed  
    Q9H0F7 ADP ribosylation factor like 6 interacting protein 2 ATL2    HPRD  PubMed  
    Q9H0F7 P60468 SEC61B    HPRD  PubMed  
    BioGRID:123889 BioGRID:116812 ARL6IP1    BioGRID  PubMed Two-hybrid 
    BioGRID:123889 BioGRID:119477 ARL6IP4    BioGRID  PubMed Two-hybrid 
    BioGRID:123889 BioGRID:115801 ARL6IP5    BioGRID  PubMed Two-hybrid 
    BioGRID:123889 BioGRID:127351 ARL6IP6    BioGRID  PubMed Two-hybrid 
    BioGRID:123889 BioGRID:122115 ATL2    BioGRID  PubMed Two-hybrid 
    BioGRID:123889 BioGRID:116152 SEC61B    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:123889 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    Homology

    Clone Names

    • MGC32934

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipid binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
     
    Process Evidence Code Pubs
    Wnt receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
     
    cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
     
    cilium assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    determination of left/right symmetry ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    fat cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    melanosome transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein polymerization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein targeting to membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    small GTPase mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    colocalizes_with BBSome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    axonemal microtubule ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cilium axoneme ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cilium membrane IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    membrane coat ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    microtubule basal body IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    ADP-ribosylation factor-like protein 6
    Names
    ADP-ribosylation factor-like protein 6
    bardet-Biedl syndrome 3 protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008119.1 RefSeqGene

      Range
      5001..38779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_032146.3NP_115522.1  ADP-ribosylation factor-like protein 6

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript but encodes the same protein as variant 2.
      Source sequence(s)
      BC024239, BU607306
      Consensus CDS
      CCDS2928.1
      UniProtKB/Swiss-Prot
      Q9H0F7
      Related
      ENSP00000337722, ENST00000335979
      Conserved Domains (2) summary
      COG1100
      Location:14143
      Blast Score: 177
      COG1100; GTPase SAR1 and related small G proteins [General function prediction only]
      cd04157
      Location:19180
      Blast Score: 823
      Arl6; Arf-like 6 (Arl6) GTPase
    2. NM_177976.1NP_816931.1  ADP-ribosylation factor-like protein 6

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      BC024239, BM705017, BU607306
      Consensus CDS
      CCDS2928.1
      UniProtKB/Swiss-Prot
      Q9H0F7
      Related
      ENSP00000377756, ENST00000394206
      Conserved Domains (2) summary
      COG1100
      Location:14143
      Blast Score: 177
      COG1100; GTPase SAR1 and related small G proteins [General function prediction only]
      cd04157
      Location:19180
      Blast Score: 823
      Arl6; Arf-like 6 (Arl6) GTPase

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000003.11 Reference GRCh37.p10 Primary Assembly

      Range
      97483595..97517373
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000135.1 Alternate HuRef

      Range
      94853500..94887283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018914.1 Alternate CHM1_1.0

      Range
      97460394..97494174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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