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AT1G30590 RNA polymerase I specific transcription initiation factor RRN3 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839939, updated on 7-Sep-2023

Summary

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Gene symbol
AT1G30590
Gene description
RNA polymerase I specific transcription initiation factor RRN3 protein
Primary source
Araport:AT1G30590
Locus tag
AT1G30590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5I8.4; T5I8_4
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Genomic context

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See AT1G30590 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Sequence:
Chromosome: 1; NC_003070.9 (10835735..10840872, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hercules receptor kinase 2 Neighboring gene GTP binding protein Neighboring gene Subtilase family protein Neighboring gene pentatricopeptide (PPR) repeat-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins. Hackbusch J, et al. Proc Natl Acad Sci U S A, 2005 Mar 29. PMID 15781858, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_102796.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA polymerase I general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase I promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA polymerase I specific transcription initiation factor RRN3 protein
NP_174347.1
  • RNA polymerase I specific transcription initiation factor RRN3 protein; CONTAINS InterPro DOMAIN/s: RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991); BEST Arabidopsis thaliana protein match is: RNA polymerase I specific transcription initiation factor RRN3 protein (TAIR:AT2G34750.1); Has 367 Blast hits to 352 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 133; Plants - 65; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10835735..10840872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332911.1 → NP_001320919.1  RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLR0, A0A1P8APA8, A0A384LLZ2, A0A5S9WEQ8
    Conserved Domains (1) summary
    pfam05327
    Location:20 → 534
    RRN3; RNA polymerase I specific transcription initiation factor RRN3

  2. NM_001332912.1 → NP_001320918.1  RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLR0, A0A1P8APA8, A0A384LLZ2, A0A5S9WEQ8
    Conserved Domains (1) summary
    pfam05327
    Location:20 → 534
    RRN3; RNA polymerase I specific transcription initiation factor RRN3

  3. NM_102796.2 → NP_174347.1  RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174347.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WEQ8, F4I6D6
    Conserved Domains (1) summary
    pfam05327
    Location:30 → 531
    RRN3; RNA polymerase I specific transcription initiation factor RRN3
Nucleotide Protein
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