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    HIST2H2BE histone cluster 2, H2be [ Homo sapiens ]

    Gene ID: 8349, updated on 12-May-2012

    Summary

    Official Symbol
    HIST2H2BEprovided by HGNC
    Official Full Name
    histone cluster 2, H2beprovided by HGNC
    Primary source
    HGNC:4760
    See related
    Ensembl:ENSG00000184678; HPRD:03494; MIM:601831; Vega:OTTHUMG00000012095
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    H2B; H2BQ; GL105; H2B.1; H2BFQ; H2BGL105; MGC119802; MGC119804; MGC129733; MGC129734
    Summary
    Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene encodes a member of the histone H2B family, and generates two transcripts through the use of the conserved stem-loop termination motif, and the polyA addition motif. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    1q21.2
    Sequence :
    Chromosome: 1; NC_000001.10 (149856010..149858232, complement)
    See HIST2H2BE in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100132909 Neighboring gene histone cluster 2, H3a Neighboring gene histone cluster 2, H4b Neighboring gene histone cluster 2, H2ac Neighboring gene histone cluster 2, H2ab

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Tat tat HIV-1 Tat peptides bind core histones H2A, H2B, H3 and H4, and Tat protein recruits histone acetyltransferases to the HIV-1 LTR promoter leading to acetylation of histones H3 and H4, derepressing chromatin structure and increasing NFkappaB responsiveness PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_003519.1 NP_005638.1 TBL1X    BIND  PubMed H2B interacts with TBL1. 
    NP_003519.1 NP_078941.2 TBL1XR1    BIND  PubMed H2B interacts with TBLR1. 
    Q16778 P31749 AKT1    HPRD  PubMed  
    Q16778 P15336 ATF2    HPRD  PubMed  
    Q16778 Bromodomain containing 7 BRD7    HPRD  PubMed  
    Q16778 Q92630 DYRK2    HPRD  PubMed  
    Q16778 P24522 GADD45A    HPRD  PubMed  
    Q16778 P54198 HIRA    HPRD  PubMed  
    Q16778 Q9BW71 HIRIP3    HPRD  PubMed  
    Q16778 P10809 HSPD1    HPRD  PubMed  
    Q16778 P52294 KPNA1    HPRD  PubMed  
    Q16778 P00709 LALBA    HPRD  PubMed  
    Q16778 Q99733 NAP1L4    HPRD  PubMed  
    Q16778 P06454 PTMA    HPRD  PubMed  
    Q16778 P18754 RCC1    HPRD  PubMed  
    Q16778 O75446 SAP30    HPRD  PubMed  
    Q16778 O60907 TBL1X    HPRD  PubMed  
    Q16778 Q9BZK7 TBL1XR1    HPRD  PubMed  
    Q16778 P21980 TGM2    HPRD  PubMed  
    Q16778 Q92973 TNPO1    HPRD  PubMed  
    BioGRID:113945 BioGRID:106823 AIRE    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:113791 ANP32A    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:121559 ARID1B    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:114497 BAZ1B    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:111973 BRD2    BioGRID  PubMed FRET; Protein-peptide 
    BioGRID:113945 BioGRID:120548 C20orf20    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113945 BioGRID:107487 CENPA    BioGRID  PubMed Co-purification 
    BioGRID:113945 BioGRID:113643 DEK    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113945 BioGRID:118984 DNMT3L    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:115021 DZIP3    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity 
    BioGRID:113945 BioGRID:108347 EP300    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:120172 GATAD2A    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:121529 GATAD2B    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:109268 H2AFX    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:113945 BioGRID:109272 H3F3A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113945 BioGRID:1205534 HCVgp1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:109318 HDGF    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113945 BioGRID:113955 HIST1H4A    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:109561 HSPD1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113945 BioGRID:114838 MAP4K4    BioGRID  PubMed Two-hybrid 
    BioGRID:113945 BioGRID:110358 MDM2    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
    BioGRID:113945 BioGRID:116134 MORF4L1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113945 BioGRID:115001 MORF4L2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113945 BioGRID:120467 MSL2    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:110757 NAP1L4    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:110771 NCL    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:110815 NEDD8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113945 BioGRID:110929 NPM1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:124320 PARP10    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:115351 PARP3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113945 BioGRID:120490 PBRM1    BioGRID  PubMed Protein-peptide 
    BioGRID:113945 BioGRID:117973 PELP1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:1208742 PFI0930c    BioGRID  PubMed Co-crystal Structure 
    BioGRID:113945 BioGRID:247665 Prkaca    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:111832 RAG1    BioGRID  PubMed Far Western 
    BioGRID:113945 BioGRID:107529 RCC1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:127922 RNF168    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113945 BioGRID:121119 RNF20    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:114676 RPS6KA5    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:114346 SAP30    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:119602 SIRT7    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:115841 SMC2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113945 BioGRID:112665 STK4    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:116367 SUPT16H    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113945 BioGRID:114484 TAF1A    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:114483 TAF1B    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:113945 BioGRID:112770 TBL1X    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:122834 TBL1XR1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:113109 TSPY1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:113945 BioGRID:128522 USP12    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:122327 USP46    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:201816 Uhrf1    BioGRID  PubMed Affinity Capture-Western; Far Western 
    BioGRID:113945 BioGRID:113282 VRK1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113945 BioGRID:61115 msl-1    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:59776 msl-2    BioGRID  PubMed Biochemical Activity 
    BioGRID:113945 BioGRID:1205541 tat    BioGRID  PubMed Protein-peptide 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    • Alcoholism, organism-specific biosystem (from KEGG)
      Alcoholism, organism-specific biosystemAlcoholism, also called dependence on alcohol (ethanol), is a chronic relapsing disorder that is progressive and has serious detrimental health outcomes. As one of the primary mediators of the reward...
    • Alcoholism, conserved biosystem (from KEGG)
      Alcoholism, conserved biosystemAlcoholism, also called dependence on alcohol (ethanol), is a chronic relapsing disorder that is progressive and has serious detrimental health outcomes. As one of the primary mediators of the reward...
    • Amyloids, organism-specific biosystem (from REACTOME)
      Amyloids, organism-specific biosystemAmyloid is a term used to describe typically extracellular deposits of aggregated proteins, sometimes known as plaques. Abnormal accumulation of amyloid is amyloidosis, a term associated with disease...
    • Cell Cycle, organism-specific biosystem (from REACTOME)
      Cell Cycle, organism-specific biosystem
      Cell Cycle
    • Chromosome Maintenance, organism-specific biosystem (from REACTOME)
      Chromosome Maintenance, organism-specific biosystemChromosome maintenance is critical for stable chromosome function in mammalian and other eukaryotic cells. Aspects of telomere maintenance and nucleosome assembly are covered here.
    • Deposition of New CENPA-containing Nucleosomes at the Centromere, organism-specific biosystem (from REACTOME)
      Deposition of New CENPA-containing Nucleosomes at the Centromere, organism-specific biosystemEukaryotic centromeres are marked by a unique form of histone H3, designated CENPA in humans. In human cells newly synthesized CENPA is deposited in nucleosomes at the centromere during late telophas...
    • Disease, organism-specific biosystem (from REACTOME)
      Disease, organism-specific biosystemBiological processes are captured in Reactome by identifying the molecules (DNA, RNA, protein, small molecules) involved in them and describing the details of their interactions. From this molecular ...
    • Gene Expression, organism-specific biosystem (from REACTOME)
      Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
    • Meiosis, organism-specific biosystem (from REACTOME)
      Meiosis, organism-specific biosystemDuring meiosis the replicated chromosomes of a single diploid cell are segregated into 4 haploid daughter cells by two successive divisions, meiosis I and meiosis II. In meiosis I, the distinguishing...
    • Meiotic Recombination, organism-specific biosystem (from REACTOME)
      Meiotic Recombination, organism-specific biosystemMeiotic recombination exchanges segments of duplex DNA between chromosomal homologs, generating genetic diversity (reviewed in Handel and Schimenti 2010, Inagaki et al. 2010, Cohen et al. 2006). Ther...
    • Meiotic Synapsis, organism-specific biosystem (from REACTOME)
      Meiotic Synapsis, organism-specific biosystemMeiotic synapsis is the stable physical pairing of homologous chromosomes that begins in leptonema of prophase I and lasts until anaphase of prophase I. First, short segments of axial elements form a...
    • Nucleosome assembly, organism-specific biosystem (from REACTOME)
      Nucleosome assembly, organism-specific biosystemThe formation of centromeric chromatin assembly outside the context of DNA replication involves the assembly of nucleosomes containing the histone H3 variant CenH3 (also called CENP-A).
    • Packaging Of Telomere Ends, organism-specific biosystem (from REACTOME)
      Packaging Of Telomere Ends, organism-specific biosystemMultiple steps, including C-strand resection, telomerase-mediated elongation, and C-strand synthesis are involved in processing and maintaining the telomere. Though this module posits a linear trans...
    • RNA Polymerase I Chain Elongation, organism-specific biosystem (from REACTOME)
      RNA Polymerase I Chain Elongation, organism-specific biosystem
      RNA Polymerase I Chain Elongation
    • RNA Polymerase I Promoter Clearance, organism-specific biosystem (from REACTOME)
      RNA Polymerase I Promoter Clearance, organism-specific biosystemPromoter clearance is one of the rate-limiting steps in Polymerase I transcription. This step is composed of three phases, promoter opening, transcription initiation and promoter escape.
    • RNA Polymerase I Promoter Opening, organism-specific biosystem (from REACTOME)
      RNA Polymerase I Promoter Opening, organism-specific biosystemThe activity of the upstream binding factor (UBF-1) plays an important role in the regulation of rRNA synthesis. Studies reveal that phosphorylation of UBF-1 is required for its interaction with the ...
    • RNA Polymerase I Transcription, organism-specific biosystem (from REACTOME)
      RNA Polymerase I Transcription, organism-specific biosystemThe rRNA genes are transcribed by RNA polymerase I, one of three eukaryotic nuclear RNA polymerases. The polymerase is a multisubunit complex, composed of two large subunits (the most conserved porti...
    • RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription, organism-specific biosystem (from REACTOME)
      RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription, organism-specific biosystemTranscription by RNA Polymerase I, RNA Polymerase III and transcription from mitochondrial promoters.
    • Systemic lupus erythematosus, organism-specific biosystem (from KEGG)
      Systemic lupus erythematosus, organism-specific biosystemSystemic lupus erythematosus (SLE) is a prototypic autoimmune disease characterised by the production of IgG autoantibodies that are specific for self-antigens, such as DNA, nuclear proteins and cert...
    • Systemic lupus erythematosus, conserved biosystem (from KEGG)
      Systemic lupus erythematosus, conserved biosystemSystemic lupus erythematosus (SLE) is a prototypic autoimmune disease characterised by the production of IgG autoantibodies that are specific for self-antigens, such as DNA, nuclear proteins and cert...
    • Telomere Maintenance, organism-specific biosystem (from REACTOME)
      Telomere Maintenance, organism-specific biosystemTelomeres are protein-DNA complexes at the ends of linear chromosomes that are important for genome stability. Telomeric DNA in humans, as in many eukaryotic organisms, consists of tandem repeats (B...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
     
    nucleosome assembly NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    nucleosome NAS
    Non-traceable Author Statement
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    histone H2B type 2-E
    Names
    histone H2B type 2-E
    histone H2B.q
    histone 2, H2be
    histone H2B-GL105
    H2B histone family, member Q

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_003528.2NP_003519.1  histone H2B type 2-E

      Status: REVIEWED

      Source sequence(s)
      X57985
      Consensus CDS
      CCDS936.1
      UniProtKB/Swiss-Prot
      Q16778
      Related
      ENSP00000358151, OTTHUMP00000013920, ENST00000369155, OTTHUMT00000033455
      Conserved Domains (1) summary
      cl00074
      Location:36124
      Blast Score: 397
      H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p5 Primary Assembly

      Range
      149856010..149858232, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      121236878..121239100, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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