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Rbm5 RNA binding motif protein 5 [ Mus musculus (house mouse) ]

Gene ID: 83486, updated on 8-May-2016
Official Symbol
Rbm5provided by MGI
Official Full Name
RNA binding motif protein 5provided by MGI
Primary source
MGI:MGI:1933204
See related
Ensembl:ENSMUSG00000032580 Vega:OTTMUSG00000043551
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D030069N10Rik
Orthologs
Location:
9; 9 F1
Exon count:
26
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 9 NC_000075.6 (107740495..107771008, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (107642826..107673333, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F Neighboring gene predicted gene, 34454 Neighboring gene predicted gene, 34605 Neighboring gene RNA binding motif protein 6 Neighboring gene MON1 homolog A, secretory traffciking associated

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (1) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
mRNA binding ISO
Inferred from Sequence Orthology
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
regulation of alternative mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
 
regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 
spliceosomal complex assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
RNA-binding protein 5
Names
RNA-binding motif protein 5
putative tumor suppressor LUCA15

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_148930.3NP_683732.1  RNA-binding protein 5

    See identical proteins and their annotated locations for NP_683732.1

    Status: VALIDATED

    Source sequence(s)
    AK146880, AW047301, BY140862
    Consensus CDS
    CCDS23506.1
    UniProtKB/Swiss-Prot
    Q91YE7
    Related
    ENSMUSP00000138379, OTTMUSP00000063790, ENSMUST00000182659, OTTMUST00000114281
    Conserved Domains (6) summary
    smart00443
    Location:741787
    G_patch; glycine rich nucleic binding domain
    cd12752
    Location:93179
    RRM1_RBM5; RNA recognition motif 1 in vertebrate RNA-binding protein 5 (RBM5)
    cd12755
    Location:229314
    RRM2_RBM5; RNA recognition motif 2 in vertebrate RNA-binding protein 5 (RBM5)
    pfam00641
    Location:181209
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam14259
    Location:100171
    RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    sd00025
    Location:185204
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p3 C57BL/6J

    Range
    107740495..107771008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242921.1XP_011241223.1  

    UniProtKB/Swiss-Prot
    Q91YE7
    Related
    ENSMUSP00000035199, OTTMUSP00000063793, ENSMUST00000035199, OTTMUST00000114284
    Conserved Domains (6) summary
    smart00443
    Location:740786
    G_patch; glycine rich nucleic binding domain
    cd12752
    Location:93179
    RRM1_RBM5; RNA recognition motif 1 in vertebrate RNA-binding protein 5 (RBM5)
    cd12755
    Location:229314
    RRM2_RBM5; RNA recognition motif 2 in vertebrate RNA-binding protein 5 (RBM5)
    pfam00641
    Location:181209
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam14259
    Location:100171
    RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    sd00025
    Location:185204
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
  2. XM_006511870.2XP_006511933.1  

    See identical proteins and their annotated locations for XP_006511933.1

    UniProtKB/Swiss-Prot
    Q91YE7
    Conserved Domains (6) summary
    smart00443
    Location:741787
    G_patch; glycine rich nucleic binding domain
    cd12752
    Location:93179
    RRM1_RBM5; RNA recognition motif 1 in vertebrate RNA-binding protein 5 (RBM5)
    cd12755
    Location:229314
    RRM2_RBM5; RNA recognition motif 2 in vertebrate RNA-binding protein 5 (RBM5)
    pfam00641
    Location:181209
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam14259
    Location:100171
    RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    sd00025
    Location:185204
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
  3. XM_006511871.2XP_006511934.1  

    See identical proteins and their annotated locations for XP_006511934.1

    UniProtKB/Swiss-Prot
    Q91YE7
    Conserved Domains (6) summary
    smart00443
    Location:741787
    G_patch; glycine rich nucleic binding domain
    cd12752
    Location:93179
    RRM1_RBM5; RNA recognition motif 1 in vertebrate RNA-binding protein 5 (RBM5)
    cd12755
    Location:229314
    RRM2_RBM5; RNA recognition motif 2 in vertebrate RNA-binding protein 5 (RBM5)
    pfam00641
    Location:181209
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam14259
    Location:100171
    RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    sd00025
    Location:185204
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
  4. XM_006511875.2XP_006511938.1  

    See identical proteins and their annotated locations for XP_006511938.1

    Conserved Domains (3) summary
    smart00443
    Location:494540
    G_patch; glycine rich nucleic binding domain
    pfam14259
    Location:461
    RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    cl17169
    Location:167
    RRM_SF; RNA recognition motif (RRM) superfamily
  5. XM_006511874.2XP_006511937.1  

    Conserved Domains (5) summary
    smart00443
    Location:569615
    G_patch; glycine rich nucleic binding domain
    cd12755
    Location:57142
    RRM2_RBM5; RNA recognition motif 2 in vertebrate RNA-binding protein 5 (RBM5)
    pfam00641
    Location:937
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam14259
    Location:61136
    RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    sd00025
    Location:1332
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
  6. XM_006511872.2XP_006511935.1  

    See identical proteins and their annotated locations for XP_006511935.1

    UniProtKB/Swiss-Prot
    Q91YE7
    Conserved Domains (6) summary
    smart00443
    Location:741787
    G_patch; glycine rich nucleic binding domain
    cd12752
    Location:93179
    RRM1_RBM5; RNA recognition motif 1 in vertebrate RNA-binding protein 5 (RBM5)
    cd12755
    Location:229314
    RRM2_RBM5; RNA recognition motif 2 in vertebrate RNA-binding protein 5 (RBM5)
    pfam00641
    Location:181209
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam14259
    Location:100171
    RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    sd00025
    Location:185204
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
  7. XM_006511876.1XP_006511939.1  

    See identical proteins and their annotated locations for XP_006511939.1

    Conserved Domains (3) summary
    smart00443
    Location:494540
    G_patch; glycine rich nucleic binding domain
    pfam14259
    Location:461
    RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    cl17169
    Location:167
    RRM_SF; RNA recognition motif (RRM) superfamily

RNA

  1. XR_871107.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000031.1 Alternate Mm_Celera

    Range
    107348392..107378792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)