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    VPS2.2 vacuolar protein sorting-associated protein 2-2 [ Arabidopsis thaliana ]

    Gene ID: 834483, updated on 6-May-2012
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    Summary

    Gene symbol
    VPS2.2
    Gene description
    vacuolar protein sorting-associated protein 2-2
    Primary source
    TAIR:AT5G44560
    Locus tag
    AT5G44560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFC16.25; MFC16_25; VPS2; VPS2.2
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    Genomic context

    Location :
    chromosome: 5
    Sequence :
    Chromosome: 5; NC_003076.8 (17945957..17948400)
    See VPS2.2 in MapViewer

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene hypothetical protein

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana. Ibl V, et al. J Proteome Res, 2012 Jan 1. PMID 22010978.
    2. The Arabidopsis ESCRT protein-protein interaction network. Shahriari M, et al. Plant Mol Biol, 2011 May. PMID 21442383.
    3. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720.
    4. Exploring the ESCRTing machinery in eukaryotes. Winter V, et al. Trends Plant Sci, 2006 Mar. PMID 16488176.
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. protein interaction mapping identified membrane-associated, nuclear and extracellular proteins binding atVP2.2, indicating that AtVPS2.2 might be involved in processes beyond the classical ESCRT role
      Title: Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:19733 BioGRID:22808 ADL6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:4189 AT2G42520    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:9776 AT3G52930    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:10835 AT3G63460    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:17599 AT5G22610    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:18122 AT5G27850    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:20015 AT5G47210    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:21463 AT5G60980    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:19463 DL1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:10663 DL1B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:23288 DL1C    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:10503 DL1E    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:27476 DL3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:5939 EIF4A1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:1770 HA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:16298 HSC70-1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:21353 HTA6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:23414 Hsp70b    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:5200 IBR3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:12325 MEE58    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:2219 PAB4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:4540 PIP1B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:6150 PLDALPHA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:1933 RPN1A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:14584 RPS6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:23233 SAC52    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:14324 SNF7.1    BioGRID  PubMed Affinity Capture-MS; PCA; Two-hybrid 
    BioGRID:19733 BioGRID:1857 SNF7.2    BioGRID  PubMed PCA 
    BioGRID:19733 BioGRID:29565 SUS2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:11191 UBQ10    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:19733 BioGRID:606 VPS2.1    BioGRID  PubMed Affinity Capture-MS; PCA; Two-hybrid 
    BioGRID:19733 BioGRID:19733 VPS2.2    BioGRID  PubMed Affinity Capture-MS; PCA; Two-hybrid 
    BioGRID:19733 BioGRID:12930 VPS25    BioGRID  PubMed PCA; Two-hybrid 
    BioGRID:19733 BioGRID:13530 VPS28-1    BioGRID  PubMed PCA; Two-hybrid 
    BioGRID:19733 BioGRID:23589 VPS46.1    BioGRID  PubMed Affinity Capture-MS; PCA; Two-hybrid 
    BioGRID:19733 BioGRID:28853 VPS46.2    BioGRID  PubMed Affinity Capture-MS; Two-hybrid 
    BioGRID:19733 BioGRID:5567 VPS60.1    BioGRID  PubMed Affinity Capture-MS; PCA 
    BioGRID:19733 BioGRID:23929 emb1507    BioGRID  PubMed Affinity Capture-MS 
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    General gene information

    NM_001125899.1
    NM_123823.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    		  
    Process Evidence Code Pubs
    vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    ESCRT III complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
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    General protein information

    Names
    vacuolar protein sorting-associated protein 2-2
    NP_001119371.1
    • SNF7 family protein VPS2.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_199269.1
    • SNF7 family protein VPS2.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 1712 Blast hits to 1710 proteins in 241 species: Archae - 0; Bacteria - 17; Metazoa - 794; Fungi - 317; Plants - 378; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8

      Range
      17945957..17948400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125899.1 → NP_001119371.1  vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WTY4
      Conserved Domains (1) summary
      cl02305
      Location:4 – 166
      Blast Score: 270
      Snf7; Snf7

    2. NM_123823.5 → NP_199269.1  vacuolar protein sorting-associated protein 2-2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WTY4
      Conserved Domains (1) summary
      cl02305
      Location:17 – 186
      Blast Score: 272
      Snf7; Snf7
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic CP002688.1 AED95124.1
    genomic CP002688.1 AED95123.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WTY4.2 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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