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    Caci_1028 hypothetical protein [ Catenulispora acidiphila DSM 44928 ]

    Gene ID: 8332363, updated on 18-May-2013
    Gene symbol
    Caci_1028
    Gene description
    hypothetical protein
    Locus tag
    Caci_1028
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Catenulispora acidiphila DSM 44928 (strain: DSM 44928)
    Lineage
    Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Catenulisporineae; Catenulisporaceae; Catenulispora
    Sequence :
    NC_013131.1 (1165761..1167002, complement)

    NC_013131.1Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene peptidase S41 Neighboring gene ABC transporter Neighboring gene peptidoglycan-binding protein Neighboring gene hypothetical protein Neighboring gene two component transcriptional regulator Neighboring gene histidine kinase

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome sequence of Catenulispora acidiphila type strain (ID 139908). Copeland A, et al. Stand Genomic Sci, 2009 Sep 24. PMID 21304647.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    hypothetical protein
    YP_003111795.1
    • PFAM: protein of unknown function DUF214~KEGG: fre:Franean1_0086 hypothetical protein

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013131.1

      Range
      1165761..1167002, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_003111795.1 hypothetical protein Caci_1028 [Catenulispora acidiphila DSM 44928]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C7Q494
      Conserved Domains (3) summary
      pfam02687
      Location:309 – 342
      Blast Score: 96
      FtsX; FtsX-like permease family
      pfam12704
      Location:37 – 254
      Blast Score: 221
      MacB_PCD; MacB-like periplasmic core domain
      COG0577
      Location:43 – 411
      Blast Score: 142
      SalY; ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
    Nucleotide Protein
    Heading Accession and Version
    genomic CP001700.1 ACU69954.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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