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    RPS6 40S ribosomal protein S6-1 [ Arabidopsis thaliana ]

    Gene ID: 829298, updated on 8-Jan-2012

    Summary

    Gene symbol
    RPS6
    Gene description
    40S ribosomal protein S6-1
    Primary source
    TAIR:AT4G31700
    Locus tag
    AT4G31700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28M20.110; F28M20_110; ribosomal protein S6; RIBOSOMAL PROTEIN S6; RPS6; RPS6A
    Summary
    Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis.

    Genomic context

    Sequence :
    Chromosome: 4; NC_003075.7 (15346072..15347727, complement)
    See RPS6 in MapViewer

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein REM9 Neighboring gene tRNA Neighboring gene glutamate receptor 2.4 Neighboring gene TBP-associated factor II 15

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:14584 BioGRID:9283 EDS1    BioGRID  PubMed Affinity Capture-Western; PCA 
    BioGRID:14584 BioGRID:19733 VPS2.2    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Pathways from BioSystems

    NM_001085006.1
    NM_119319.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    growth IGI
    Inferred from Genetic Interaction
    more info
     
    rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    ribosomal small subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    translation ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    chloroplast IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol IDA
    Inferred from Direct Assay
    more info
     
    cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosolic small ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasmodesma IDA
    Inferred from Direct Assay
    more info
     

    General protein information

    Names
    40S ribosomal protein S6-1
    NP_001078475.1
    • ribosomal protein S6 (RPS6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: growth, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377); BEST Arabidopsis thaliana protein match is: Ribosomal protein S6e (TAIR:AT5G10360.1); Has 870 Blast hits to 868 proteins in 314 species: Archae - 19; Bacteria - 0; Metazoa - 402; Fungi - 166; Plants - 138; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).
    NP_194898.1
    • ribosomal protein S6 (RPS6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: growth, translation; LOCATED IN: in 6 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401); BEST Arabidopsis thaliana protein match is: Ribosomal protein S6e (TAIR:AT5G10360.1); Has 1159 Blast hits to 1155 proteins in 426 species: Archae - 247; Bacteria - 0; Metazoa - 418; Fungi - 171; Plants - 143; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7

      Range
      15346072..15347727, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119319.4NP_194898.1  40S ribosomal protein S6-1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48549
      Conserved Domains (1) summary
      cl00931
      Location:1225
      Blast Score: 601
      Ribosomal_S6e; Ribosomal protein S6e
    2. NM_001085006.1NP_001078475.1  40S ribosomal protein S6-1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MS03
      Conserved Domains (1) summary
      cl00931
      Location:1163
      Blast Score: 350
      Ribosomal_S6e; Ribosomal protein S6e

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AL031004.1 CAA19753.1
    mRNA BT000693.1 AAN31838.1
    genomic AL161579.2 CAB79888.1
    genomic AJ270060.1 CAB79888.1
    mRNA AY050803.1 AAK92738.1
    genomic CP002687.1 AEE85946.1
    mRNA AY113983.1 AAM45031.1
    genomic CP002687.1 AEE85947.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    O48549.2 GenPept

      Supplemental Content