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TBL18 TRICHOME BIREFRINGENCE-LIKE 18 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828639, updated on 15-Feb-2024

Summary

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Gene symbol
TBL18
Gene description
TRICHOME BIREFRINGENCE-LIKE 18
Primary source
Araport:AT4G25360
Locus tag
AT4G25360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T30C3.30; T30C3_30; TRICHOME BIREFRINGENCE-LIKE 18
Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (12969559..12972666)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene FK506 BINDING PROTEIN 53 Neighboring gene EXS (ERD1/XPR1/SYG1) family protein Neighboring gene Double Clp-N motif protein Neighboring gene stress-associated protein 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036635.1
NM_118668.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables O-acyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRICHOME BIREFRINGENCE-LIKE 18
NP_001031712.1
  • TRICHOME BIREFRINGENCE-LIKE 18; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G51640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_194266.2
  • TRICHOME BIREFRINGENCE-LIKE 18 (TBL18); INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G51640.1); Has 1342 Blast hits to 1320 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1339; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12969559..12972666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118668.5 → NP_194266.2  TRICHOME BIREFRINGENCE-LIKE 18 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194266.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYS5, Q9STK1
    UniProtKB/TrEMBL
    A0A178V5X6, A0A654FSV2
    Conserved Domains (2) summary
    pfam13839
    Location:227 → 523
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:173 → 226
    PMR5N; PMR5 N terminal Domain

  2. NM_001036635.1 → NP_001031712.1  TRICHOME BIREFRINGENCE-LIKE 18 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031712.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYS5, Q9STK1
    UniProtKB/TrEMBL
    A0A178V5X6, A0A654FSV2
    Conserved Domains (2) summary
    pfam13839
    Location:227 → 523
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:173 → 226
    PMR5N; PMR5 N terminal Domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYS5.1

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