Display Settings:

Format

Send to:

Choose Destination

AT4G16360 SNF1-related protein kinase regulatory subunit beta-2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827331, updated on 2-May-2015
Gene symbol
AT4G16360
Gene description
SNF1-related protein kinase regulatory subunit beta-2
Primary source
TAIR:AT4G16360
Locus tag
AT4G16360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4210W; FCAALL.163
See AT4G16360 in MapViewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (9245078..9247251)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene calcineurin B-like protein 6 Neighboring gene ncRNA Neighboring gene oligopeptide transporter Neighboring gene metal ion binding protein

Products Interactant Other Gene Complex Source Pubs Description

Homology

  • Homologs of the AT4G16360 gene: The AT4G16360 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, M.oryzae, N.crassa, and frog.
NM_001036573.5
NM_117731.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
AMP-activated protein kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase regulator activity IDA
Inferred from Direct Assay
more info
PubMed 
protein kinase regulator activity IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulation of protein kinase activity IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISM
Inferred from Sequence Model
more info
 
Names
SNF1-related protein kinase regulatory subunit beta-2
NP_001031650.2
  • 5'-AMP-activated protein kinase beta-2 subunit protein; FUNCTIONS IN: AMP-activated protein kinase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT5G21170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001190741.1
  • 5'-AMP-activated protein kinase beta-2 subunit protein; FUNCTIONS IN: AMP-activated protein kinase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT5G21170.1).
NP_193369.2
  • 5'-AMP-activated protein kinase beta-2 subunit protein; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT5G21170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9245078..9247251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203812.1NP_001190741.1  SNF1-related protein kinase regulatory subunit beta-2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190741.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JLS6
    Conserved Domains (2) summary
    cd02859
    Location:75151
    E_set_AMPKbeta_like_N; N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit
    pfam04739
    Location:171259
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
  2. NM_001036573.5NP_001031650.2  SNF1-related protein kinase regulatory subunit beta-2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031650.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2V3H9
    Conserved Domains (2) summary
    cd02859
    Location:73148
    E_set_AMPKbeta_like_N; N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit
    pfam04739
    Location:168256
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
  3. NM_117731.6NP_193369.2  SNF1-related protein kinase regulatory subunit beta-2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193369.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SCY5
    Conserved Domains (2) summary
    cd02859
    Location:73149
    E_set_AMPKbeta_like_N; N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit
    pfam04739
    Location:169257
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain