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AT4G13050 Acyl-ACP thioesterase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826919, updated on 15-Oct-2023

Summary

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Gene symbol
AT4G13050
Gene description
Acyl-ACP thioesterase
Primary source
Araport:AT4G13050
Locus tag
AT4G13050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25G13.140; F25G13_140
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Genomic context

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See AT4G13050 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (7617428..7619657)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reduced expression of FatA thioesterases in Arabidopsis affects the oil content and fatty acid composition of the seeds. Moreno-Pérez AJ, et al. Planta, 2012 Mar. PMID 22002626
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_117374.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Acyl-ACP thioesterase
NP_193041.1
  • Acyl-ACP thioesterase; FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: fatA acyl-ACP thioesterase (TAIR:AT3G25110.1); Has 1268 Blast hits to 1268 proteins in 529 species: Archae - 0; Bacteria - 942; Metazoa - 0; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7617428..7619657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117374.4 → NP_193041.1  Acyl-ACP thioesterase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193041.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GWU8, Q9SV64
    UniProtKB/TrEMBL
    A0A178UY64, A0A5S9XRS5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SV64.1

Gene LinkOut

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