These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_012547.1 RefSeqGene
- Range
- 5001..155945
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001039590.2 → NP_001034679.2 probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the longer transcript and encodes the longer isoform (3).
- Source sequence(s)
-
AA261797, AF070645, AL109797, AW183065, BC063645, BE925861, BX956755, CD619095, DA854185, X98296
- Consensus CDS
-
CCDS43930.1
- UniProtKB/TrEMBL
-
Q6P468
- UniProtKB/Swiss-Prot
-
Q93008
- Related
- ENSP00000316357, OTTHUMP00000216101, ENST00000324545, OTTHUMT00000056250
- Conserved Domains (3) summary
-
- cd02659
Location:1555 – 1958
Blast Score: 1099
- peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
- pfam09606
Location:2486 – 2564
Blast Score: 95
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00443
Location:1555 – 1953
Blast Score: 655
- UCH; Ubiquitin carboxyl-terminal hydrolase
-
NM_001039591.2 → NP_001034680.2 probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate in-frame splice site at the 3' end of an exon compared to variant 3. The resulting isoform (4) has the same N- and C-termini but is shorter compared to isoform 3.
- Source sequence(s)
-
AA261797, AL109797, AW183065, BC046205, BC063645, BE925861, BX956755, CD619095, DA854185, X98296
- Consensus CDS
-
CCDS55403.1
- UniProtKB/TrEMBL
-
Q6P468
- UniProtKB/TrEMBL
-
Q86X58
- UniProtKB/Swiss-Prot
-
Q93008
- Related
- ENSP00000367558, OTTHUMP00000023142, ENST00000378308, OTTHUMT00000056248
- Conserved Domains (2) summary
-
- cd02659
Location:1555 – 1958
Blast Score: 1100
- peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
- pfam00443
Location:1555 – 1953
Blast Score: 655
- UCH; Ubiquitin carboxyl-terminal hydrolase
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000023.10 Reference GRCh37.p5 Primary Assembly
- Range
- 40944888..41095832
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000155.1 Alternate HuRef
- Range
- 38676295..38826441
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_004652.3: Suppressed sequence
- Description
- NM_004652.3: This RefSeq was temporarily suppressed because currently there is insufficient data to support this transcript.
-
NM_021906.2: Suppressed sequence
- Description
- NM_021906.2: This RefSeq was temporarily suppressed because currently there is insufficient data to support this transcript.