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    ATL2 RING-H2 finger protein ATL2 [ Arabidopsis thaliana ]

    Gene ID: 820924, updated on 6-May-2012
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    Summary

    Gene symbol
    ATL2
    Gene description
    RING-H2 finger protein ATL2
    Primary source
    TAIR:AT3G16720
    Locus tag
    AT3G16720
    Gene type
    protein coding
    RNA name
    RING-H2 finger protein ATL2
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TL2; TOXICOS EN LEVADURA 2
    Summary
    RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.
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    Genomic context

    Location :
    chromosome: 3
    Sequence :
    Chromosome: 3; NC_003074.8 (5692738..5694127)
    See ATL2 in MapViewer

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein Neighboring gene hypothetical protein Neighboring gene condensin-2 complex subunit H2 Neighboring gene F-box/kelch-repeat protein

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Libault M, et al. Mol Plant Microbe Interact, 2007 Aug. PMID 17722694.
    2. Genetic interactions of a putative Arabidopsis thaliana ubiquitin-ligase with components of the Saccharomyces cerevisiae ubiquitination machinery. Aguilar-Henonin L, et al. Curr Genet, 2006 Oct. PMID 16897085.
    3. The ATL gene family from Arabidopsis thaliana and Oryza sativa comprises a large number of putative ubiquitin ligases of the RING-H2 type. Serrano M, et al. J Mol Evol, 2006 Apr. PMID 16557337.
    4. Isolation and gene expression analysis of Arabidopsis thaliana mutants with constitutive expression of ATL2, an early elicitor-response RING-H2 zinc-finger gene. Serrano M, et al. Genetics, 2004 Jun. PMID 15238540.
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713.

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. The ATL protein comprising Ubiquitin Ligases that is one of a multigene family.
      Title: The ATL gene family from Arabidopsis thaliana and Oryza sativa comprises a large number of putative ubiquitin ligases of the RING-H2 type.
    2. ATL2 and other members of the ATL family are activated linking to the induction of this putative class of ubiquitin ligases to plant defense signaling pathways. [ATL2]
      Title: Isolation and gene expression analysis of Arabidopsis thaliana mutants with constitutive expression of ATL2, an early elicitor-response RING-H2 zinc-finger gene.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:6258 BioGRID:32124 DOA4    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:32786 UBC4    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:35647 UBP10    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:32761 UBP14    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:35484 UBP15    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:36107 UBP16    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:36893 UBP5    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:31160 UBP6    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:34836 UBP7    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:36844 UBP9    BioGRID  PubMed Synthetic Rescue 
    BioGRID:6258 BioGRID:33854 YUH1    BioGRID  PubMed Synthetic Rescue 
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    General gene information

    NM_112545.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    zinc ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    defense response IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    response to chitin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
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    General protein information

    Names
    RING-H2 finger protein ATL2
    NP_188294.1
    • TOXICOS EN LEVADURA 2 (ATL2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin, defense response; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G15975.1); Has 9711 Blast hits to 9689 proteins in 300 species: Archae - 0; Bacteria - 2; Metazoa - 2552; Fungi - 813; Plants - 5050; Viruses - 85; Other Eukaryotes - 1209 (source: NCBI BLink).
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8

      Range
      5692738..5694127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112545.1 → NP_188294.1  RING-H2 finger protein ATL2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9T5
      Conserved Domains (2) summary
      cd00162
      Location:118 – 164
      Blast Score: 142
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam13923
      Location:115 – 162
      Blast Score: 123
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AB022217.1 BAB02764.1
    genomic BA000014.8 BAB02764.1
    genomic HB827806.1 CBD28412.1
    genomic HB841457.1 CBD33444.1
    genomic HB714003.1 CBC42047.1
    genomic FB843944.1 CAW61746.1
    genomic FB883504.1 CAW79538.1
    genomic HB753563.1 CBC77518.1
    mRNA AY062865.1 AAL32943.1
    mRNA AY081621.1 AAM10183.1
    genomic CP002686.1 AEE75857.1
    mRNA DQ086849.1 AAZ14073.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    BAB00078.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content