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AT3G07950 rhomboid protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819986, updated on 15-Feb-2024

Summary

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Gene symbol
AT3G07950
Gene description
rhomboid protein-like protein
Primary source
Araport:AT3G07950
Locus tag
AT3G07950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (2531773..2534545)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DNA glycosylase superfamily protein Neighboring gene Calcium-dependent ARF-type GTPase activating protein family Neighboring gene Phosphatidylinositol-4-phosphate 5-kinase family protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene mitogen-activated protein kinase kinase kinase 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
  2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_111674.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi trans cisterna HDA PubMed 

General protein information

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Preferred Names
rhomboid protein-like protein
NP_566326.1
  • rhomboid protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1751, integral membrane, eukaryotic (InterPro:IPR013861); Has 573 Blast hits to 573 proteins in 252 species: Archae - 14; Bacteria - 156; Metazoa - 119; Fungi - 151; Plants - 78; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2531773..2534545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111674.3 → NP_566326.1  rhomboid protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566326.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56X94, Q8LF05, Q9SFB9
    UniProtKB/TrEMBL
    A0A178VIV6, A0A5S9XBA7
    Conserved Domains (1) summary
    pfam08551
    Location:44 → 142
    DUF1751; Eukaryotic integral membrane protein (DUF1751)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LF05.1

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