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    PAS_chr1-4_0422 40S small ribosomal subunit [ Pichia pastoris GS115 ]

    Gene ID: 8197010, updated on 5-Feb-2012
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    Summary

    Gene symbol
    PAS_chr1-4_0422
    Gene description
    40S small ribosomal subunit
    Locus tag
    PAS_chr1-4_0422
    Gene type
    protein coding
    RNA name
    40S small ribosomal subunit
    RefSeq status
    PROVISIONAL
    Organism
    Pichia pastoris GS115 (strain: GS115)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Pichia
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    Genomic context

    Sequence :
    Chromosome: 1; NC_012963.1 (2179232..2180124)

    Chromosome 1 - NC_012963.1Genomic Context describing neighboring genes Neighboring gene Mitochondrial protein, putative inner membrane transporter Neighboring gene Homocitrate synthase isozyme, catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate Neighboring gene 60S ribosomal protein L21 Neighboring gene Mitochondrial pyrimidine nucleotide transporter

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

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    General gene information

    Pathways from BioSystems

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    General protein information

    Names
    40S small ribosomal subunit
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    mRNA and Protein(s)

    1. XM_002490507.1 → XP_002490552.1  40S small ribosomal subunit [Pichia pastoris GS115]

      UniProtKB/TrEMBL
      C4QYE8
      Conserved Domains (3) summary
      cd00165
      Location:107 – 149
      Blast Score: 99
      S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
      PTZ00155
      Location:1 – 181
      Blast Score: 733
      PTZ00155; 40S ribosomal protein S9; Provisional
      pfam00163
      Location:5 – 106
      Blast Score: 186
      Ribosomal_S4; Ribosomal protein S4/S9 N-terminal domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic FN392319.1 CAY68271.1
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    Additional Links

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