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    ELL elongation factor RNA polymerase II [ Homo sapiens ]

    Gene ID: 8178, updated on 19-May-2012

    Summary

    Official Symbol
    ELLprovided by HGNC
    Official Full Name
    elongation factor RNA polymerase IIprovided by HGNC
    Primary source
    HGNC:23114
    See related
    Ensembl:ENSG00000105656; HPRD:02615; MIM:600284
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MEN; ELL1; PPP1R68; C19orf17; DKFZp434I1916

    Genomic context

    Location :
    19p13.1
    Sequence :
    Chromosome: 19; NC_000019.9 (18553473..18632937, complement)

    Chromosome 19 - NC_000019.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100653010 Neighboring gene leucine rich repeat containing 25 Neighboring gene single stranded DNA binding protein 4 Neighboring gene inositol-3-phosphate synthase 1 Neighboring gene FK506 binding protein 8, 38kDa Neighboring gene KxDL motif containing 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Tat tat HIV-1 Tat directly interacts with ELL as demonstrated by Tat-affinity column purification PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    P55199 Q96JC9 EAF1    HPRD  PubMed  
    P55199 Q96CJ1 EAF2    HPRD  PubMed  
    P55199 Q00839 HNRNPU    HPRD  PubMed  
    P55199 P24928 POLR2A    HPRD  PubMed  
    P55199 Q96H20 SNF8    HPRD  PubMed  
    P55199 P0C1Z6 TFPT    HPRD  PubMed  
    P55199 P04637 TP53    HPRD  PubMed  
    BioGRID:113828 BioGRID:124514 EAF1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113828 BioGRID:120943 EAF2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113828 BioGRID:110443 MLL    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113828 BioGRID:110444 MLLT1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113828 BioGRID:110446 MLLT3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113828 BioGRID:116593 SIRT2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113828 BioGRID:116425 SNF8    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113828 BioGRID:118931 TFPT    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113828 BioGRID:113010 TP53    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:113828 BioGRID:115503 USPL1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113828 BioGRID:116406 ZHX1    BioGRID  PubMed Two-hybrid 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    phosphatase binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    gene expression TAS
    Traceable Author Statement
    more info
     
    in utero embryonic development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of phosphatase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of transcription elongation, DNA-dependent TAS
    Traceable Author Statement
    more info
    PubMed 
    positive regulation of viral transcription TAS
    Traceable Author Statement
    more info
     
    regulation of transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    transcription elongation from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    transcription from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    viral reproduction TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    Cajal body IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear speck IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    RNA polymerase II elongation factor ELL
    Names
    RNA polymerase II elongation factor ELL
    ELL gene (11-19 lysine-rich leukemia gene)
    eleven-nineteen lysine-rich leukemia protein
    protein phosphatase 1, regulatory subunit 68

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_006532.3NP_006523.1  RNA polymerase II elongation factor ELL

      Status: VALIDATED

      Source sequence(s)
      BC033673, BI458899, U16282
      Consensus CDS
      CCDS12380.1
      UniProtKB/Swiss-Prot
      P55199
      Related
      ENSP00000262809, ENST00000262809
      Conserved Domains (2) summary
      pfam07303
      Location:513614
      Blast Score: 377
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:5293
      Blast Score: 1003
      ELL; RNA polymerase II elongation factor ELL

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000019.9 Reference GRCh37.p5 Primary Assembly

      Range
      18553473..18632937, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000151.1 Alternate HuRef

      Range
      18116226..18195558, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC005387.1 AAC28752.1
    genomic AC010335.8 (57386..136831) None
    genomic CH471106.1 EAW84707.1
      EAW84708.1
    mRNA AB208794.1 BAD92031.1
    mRNA AF157562.1 AAD45322.1
    mRNA AK225481.1 None
    mRNA AK293105.1 BAF85794.1
    mRNA AK309878.1 None
    mRNA AL136771.1 CAB66705.1
    mRNA BC010010.2 None
    mRNA BC033673.1 None
    mRNA BC049195.1 AAH49195.1
    mRNA BC064558.1 None
    mRNA BC108256.1 None
    mRNA BI458899.1 None
    mRNA U16282.1 AAA57120.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    P55199.1 GenPept UniProtKB/Swiss-Prot:P55199
    Q59HG4 GenPept UniProtKB/TrEMBL:Q59HG4
    Q75MS0 GenPept UniProtKB/TrEMBL:Q75MS0

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