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    AT2G32060 40S ribosomal protein S12-2 [ Arabidopsis thaliana ]

    Gene ID: 817766, updated on 4-Feb-2012
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    Summary

    Gene symbol
    AT2G32060
    Gene description
    40S ribosomal protein S12-2
    Primary source
    TAIR:AT2G32060
    Locus tag
    AT2G32060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22D22.19; F22D22_19
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    Genomic context

    Sequence :
    Chromosome: 2; NC_003071.7 (13639016..13640370, complement)
    See AT2G32060 in MapViewer

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene major facilitator protein Neighboring gene hypothetical protein Neighboring gene putative CCR4-associated factor 1-7 Neighboring gene transcription factor Pur-alpha 1

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214.
    2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919.
    3. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066.
    4. The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. Barakat A, et al. Plant Physiol, 2001 Oct. PMID 11598216.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    General gene information

    Pathways from BioSystems

    NM_128766.5
    NM_179849.3
    NM_179850.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    translation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
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    General protein information

    Names
    40S ribosomal protein S12-2
    NP_180766.1
    • Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT1G15930.1); Has 949 Blast hits to 949 proteins in 327 species: Archae - 187; Bacteria - 0; Metazoa - 311; Fungi - 169; Plants - 131; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
    NP_850180.1
    • Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT1G15930.1); Has 949 Blast hits to 949 proteins in 327 species: Archae - 187; Bacteria - 0; Metazoa - 311; Fungi - 169; Plants - 131; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
    NP_850181.1
    • Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT1G15930.1); Has 951 Blast hits to 951 proteins in 327 species: Archae - 187; Bacteria - 0; Metazoa - 313; Fungi - 169; Plants - 131; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7

      Range
      13639016..13640370, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179849.3 → NP_850180.1  40S ribosomal protein S12-2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SKZ3
      Conserved Domains (1) summary
      cl00600
      Location:29 – 124
      Blast Score: 250
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    2. NM_128766.5 → NP_180766.1  40S ribosomal protein S12-2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SKZ3
      Conserved Domains (1) summary
      cl00600
      Location:29 – 124
      Blast Score: 250
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    3. NM_179850.1 → NP_850181.1  40S ribosomal protein S12-2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SKZ3
      Conserved Domains (1) summary
      cl00600
      Location:29 – 124
      Blast Score: 250
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC006223.4 AAD15398.1
    mRNA AY050324.1 AAK91341.1
    genomic CP002685.1 AEC08628.1
    genomic CP002685.1 AEC08629.1
    genomic CP002685.1 AEC08627.1
    mRNA AY085161.1 AAM61714.1
    mRNA AY133636.1 AAM91466.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    E84728.1 GenPept
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    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content