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    GAN gigaxonin [ Homo sapiens ]

    Gene ID: 8139, updated on 20-May-2012

    Summary

    Official Symbol
    GANprovided by HGNC
    Official Full Name
    gigaxoninprovided by HGNC
    Primary source
    HGNC:4137
    See related
    Ensembl:ENSG00000127688; HPRD:05647; MIM:605379; Vega:OTTHUMG00000137627
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GAN1; KLHL16; FLJ38059
    Summary
    This gene encodes a member of the cytoskeletal BTB/kelch (Broad-Complex, Tramtrack and Bric a brac) repeat family. The encoded protein plays a role in neurofilament architecture and is involved in mediating the ubiquitination and degradation of some proteins. Defects in this gene are a cause of giant axonal neuropathy (GAN). [provided by RefSeq, Oct 2008]

    Genomic context

    Location :
    16q24.1
    Sequence :
    Chromosome: 16; NC_000016.9 (81348571..81413803)

    Chromosome 16 - NC_000016.9Genomic Context describing neighboring genes Neighboring gene polycystic kidney disease 1-like 2 Neighboring gene beta-carotene 15,15'-monooxygenase 1 Neighboring gene microRNA 4720 Neighboring gene peptidylprolyl isomerase A (cyclophilin A) pseudogene Neighboring gene c-Maf inducing protein

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Giant axonal neuropathy-1

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Giant axonal neuropathy (GAN) is characterized by a severe early-onset peripheral motor and sensory neuropathy, central nervous system involvement (intellectual disability, seizures, cerebellar signs, and pyramidal tract signs), and characteristic tightly curled hair. Most individuals become wheelchair dependent in the second decade of life and eventually bedridden with severe polyneuropathy, ataxia, and dementia. Death usually occurs in the third decade.
    Diagnosis Testing
    The diagnosis of GAN is established by clinical findings including nerve conduction velocity (NCV), brain MRI, and peripheral nerve biopsy. The pathologic hallmark is so-called giant axons caused by the accumulation of neurofilaments. GAN is caused by mutations in GAN, encoding the protein gigaxonin. GAN is the only gene in which mutation is currently known to be associated with GAN; however, evidence exists for genetic heterogeneity. Molecular genetic testing of GAN is available.
    Genetic Counseling
    GAN is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Once an at-risk individual is known to be unaffected, the chance of his/her being a carrier is 2/3. Individuals with GAN usually do not reproduce. Prenatal testing may be available through laboratories offering custom prenatal testing if the disease-causing mutations in a family are known.
    References

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    Q9H2C0 P46821 MAP1B    HPRD  PubMed  
    Q9H2C0 Q99426 TBCB    HPRD  PubMed  
    Q9H2C0 P22314 UBA1    HPRD  PubMed  
    BioGRID:113800 BioGRID:120375 ATG16L1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113800 BioGRID:114030 CUL3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113800 BioGRID:110304 MAP1B    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113800 BioGRID:115301 RBX1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113800 BioGRID:109072 SFN    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113800 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    • Adaptive Immune System, organism-specific biosystem (from REACTOME)
      Adaptive Immune System, organism-specific biosystemAdaptive immunity refers to antigen-specific immune response efficiently involved in clearing the pathogens. The adaptive immune system is comprised of B and T lymphocytes that express receptors with...
    • Antigen processing: Ubiquitination & Proteasome degradation, organism-specific biosystem (from REACTOME)
      Antigen processing: Ubiquitination & Proteasome degradation, organism-specific biosystemIntracellular foreign or aberrant host proteins are cleaved into peptide fragments of a precise size, such that they can be loaded on to class I MHC molecules and presented externally to cytotoxic T ...
    • Class I MHC mediated antigen processing & presentation, organism-specific biosystem (from REACTOME)
      Class I MHC mediated antigen processing & presentation, organism-specific biosystemMajor histocompatibility complex (MHC) class I molecules play an important role in cell mediated immunity by reporting on intracellular events such as viral infection, the presence of intracellular b...
    • Immune System, organism-specific biosystem (from REACTOME)
      Immune System, organism-specific biosystemHumans are exposed to millions of potential pathogens daily, through contact, ingestion, and inhalation. Our ability to avoid infection depends on the adaptive immune system and during the first crit...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    neurofilament NAS
    Non-traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    gigaxonin
    Names
    gigaxonin
    kelch-like protein 16

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009007.1 RefSeqGene

      Range
      5001..70233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_022041.3NP_071324.1  gigaxonin

      Status: REVIEWED

      Source sequence(s)
      AC092139, AK095378, BC044840
      Consensus CDS
      CCDS10935.1
      UniProtKB/TrEMBL
      B3KTC3
      UniProtKB/Swiss-Prot
      Q9H2C0
      Related
      ENSP00000248272, OTTHUMP00000174972, ENST00000248272, OTTHUMT00000269050
      Conserved Domains (4) summary
      PHA03098
      Location:23554
      Blast Score: 405
      PHA03098; kelch-like protein; Provisional
      cl06652
      Location:134234
      Blast Score: 313
      BACK; BTB And C-terminal Kelch
      cl02518
      Location:20125
      Blast Score: 192
      BTB; BTB/POZ domain
      cl02701
      Location:328374
      Blast Score: 145
      Kelch_3; Galactose oxidase, central domain

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000016.9 Reference GRCh37.p5 Primary Assembly

      Range
      81348571..81413803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000148.1 Alternate HuRef

      Range
      67103386..67168596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC009148.11 (88850..127130) None
    genomic AC092139.5 (162659..189743) None
    genomic CH471114.2 EAW95535.1
    mRNA AF291673.1 AAG35311.1
    mRNA AK095378.1 BAG53035.1
    mRNA BC016717.1 None
    mRNA BC044840.1 AAH44840.1
    other-genetic HQ257897.1 ADR82652.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9H2C0.1 GenPept UniProtKB/Swiss-Prot:Q9H2C0

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