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UBXN6 UBX domain protein 6 [ Homo sapiens (human) ]

Gene ID: 80700, updated on 12-Apr-2014
Official Symbol
UBXN6provided by HGNC
Official Full Name
UBX domain protein 6provided by HGNC
Primary source
HGNC:14928
See related
Ensembl:ENSG00000167671; HPRD:18253; MIM:611946; Vega:OTTHUMG00000181954
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
UBXD1; UBXDC2
Location :
19p13
Sequence :
Chromosome: 19; NC_000019.10 (4445006..4457794, complement)
See UBXN6 in Epigenomics, MapViewer

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene SH3-domain GRB2-like 1 Neighboring gene chromatin assembly factor 1, subunit A (p150) Neighboring gene microRNA 4746 Neighboring gene hepatoma-derived growth factor-related protein 2 Neighboring gene perilipin 4 Neighboring gene perilipin 5

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Protein processing in endoplasmic reticulum, organism-specific biosystem (from KEGG)
    Protein processing in endoplasmic reticulum, organism-specific biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...
  • Protein processing in endoplasmic reticulum, conserved biosystem (from KEGG)
    Protein processing in endoplasmic reticulum, conserved biosystemThe endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylate...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
extracellular vesicular exosome IDA
Inferred from Direct Assay
more info
PubMed 
microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
UBX domain-containing protein 6
Names
UBX domain-containing protein 6
UBX domain containing 1
UBX domain-containing 1
UBX domain-containing 2
UBX domain-containing protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001171091.1NP_001164562.1  UBX domain-containing protein 6 isoform 2

    See proteins identical to NP_001164562.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 5' exon, resulting in a downstream in-frame AUG start codon, as compared to variant 1. The resulting isoform (2) is shorter than isoform 1 at the N-terminus.
    Source sequence(s)
    AF272894, BC007414, BC008288
    Consensus CDS
    CCDS54201.1
    UniProtKB/Swiss-Prot
    Q9BZV1
    Related
    ENSP00000378246, OTTHUMP00000267975, ENST00000394765, OTTHUMT00000458450
    Conserved Domains (3) summary
    cd10460
    Location:105210
    Blast Score: 407
    PUB_UBXD1; PNGase/UBA or UBX (PUB) domain of UBXD1
    cl17017
    Location:1050
    Blast Score: 82
    Phage_B; Scaffold protein B
    cl00155
    Location:281354
    Blast Score: 129
    UBQ; Ubiquitin-like proteins
  2. NM_025241.2NP_079517.1  UBX domain-containing protein 6 isoform 1

    See proteins identical to NP_079517.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    BC007414, BC008288, BM764980
    Consensus CDS
    CCDS12129.1
    UniProtKB/Swiss-Prot
    Q9BZV1
    Related
    ENSP00000301281, OTTHUMP00000267974, ENST00000301281, OTTHUMT00000458447
    Conserved Domains (3) summary
    cd10460
    Location:158263
    Blast Score: 406
    PUB_UBXD1; PNGase/UBA or UBX (PUB) domain of UBXD1
    cl17017
    Location:63103
    Blast Score: 81
    Phage_B; Scaffold protein B
    cl00155
    Location:334407
    Blast Score: 129
    UBQ; Ubiquitin-like proteins

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38 Primary Assembly

    Range
    4445006..4457794, complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

  1. AC_000151.1 Alternate HuRef

    Range
    4207464..4220339, complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018930.2 Alternate CHM1_1.1

    Range
    4444589..4457323, complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

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