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    CUL5 cullin 5 [ Homo sapiens ]

    Gene ID: 8065, updated on 19-May-2012

    Summary

    Official Symbol
    CUL5provided by HGNC
    Official Full Name
    cullin 5provided by HGNC
    Primary source
    HGNC:2556
    See related
    Ensembl:ENSG00000166266; HPRD:03444; MIM:601741; Vega:OTTHUMG00000166369
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    VACM1; VACM-1

    Genomic context

    Location :
    11q22.3
    Sequence :
    Chromosome: 11; NC_000011.9 (107879408..107978488)
    See CUL5 in Epigenomics, MapViewer

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene ribosomal protein, large, P2 pseudogene 3 Neighboring gene RAB39A, member RAS oncogene family Neighboring gene acetyl-CoA acetyltransferase 1 Neighboring gene nuclear protein, ataxia-telangiectasia locus

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Vif vif HIV-1 Vif (amino acids 144-149; SLQXLA motif; BC-box) interacts with cellular proteins Cul5, elongins B and C, and Rbx1 to form an Skp1-cullin-F-box (SCF)-like complex that allows Vif to interact with APOBEC3G and induce its ubiquitination and degradation PubMed
    vif Deletion of amino acids 120 to 138 in Cul5 significantly reduces its interaction with HIV-1 Vif, but does not affect Cul5 binding to Elongins B/C; the HCCH zinc-binding motif (residues 108-139) in Vif is required for the interaction with Cul5 PubMed
    vif HIV-1 Vif ubiquitination is promoted by Cul5 in vitro and in vivo in a manner that requires an intact SOCS-box motif in Vif, and autoubiquitination of Vif occurs within an assembled Vif-Cul5 complex PubMed
    vif The amino acids L163 and L169 located downstream of the SOCS-box motif in HIV-1 Vif are required for Vif function and efficient interaction with Cul5-ElonginB-ElonginC PubMed
    vif Two highly conserved Cys residues (C114 and C133) outside the SOCS box (amino acids 144-169) motif in HIV-1 Vif are required for the interaction of Vif with Cul5 but not ElonginC PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_003469.2 NP_055063.1 RBX1    BIND  PubMed Rbx1 interacts with Cul5. 
    Q93034 P61201 COPS2    HPRD  PubMed  
    Q93034 Q9UNS2 COPS3    HPRD  PubMed  
    Q93034 Q9BT78 COPS4    HPRD  PubMed  
    Q93034 Q92905 COPS5    HPRD  PubMed  
    Q93034 Q7L5N1 COPS6    HPRD  PubMed  
    Q93034 Q9UBW8 COPS7A    HPRD  PubMed  
    Q93034 Q99627 COPS8    HPRD  PubMed  
    Q93034 Q13098 GPS1    HPRD  PubMed  
    Q93034 P17612 PRKACA    HPRD  PubMed  
    Q93034 P62877 RBX1    HPRD  PubMed  
    Q93034 Q9UBF6 RNF7    HPRD  PubMed  
    Q93034 Q15796 SMAD2    HPRD  PubMed  
    Q93034 Q9HCE7 SMURF1    HPRD  PubMed  
    Q93034 P36897 TGFBR1    HPRD  PubMed  
    BioGRID:113743 BioGRID:119591 ANAPC11    BioGRID  PubMed Two-hybrid 
    BioGRID:113743 BioGRID:119668 ASB1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:126776 ASB12    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:119674 ASB2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:119317 ASB3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113743 BioGRID:119669 ASB4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:126612 ASB6    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:126613 ASB7    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:126615 ASB9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113743 BioGRID:120937 CAND1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:113743 BioGRID:107574 CISH    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113743 BioGRID:127317 COMMD1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113743 BioGRID:116176 COPS6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113743 BioGRID:119920 DCUN1D1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113743 BioGRID:108078 DIO2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:108126 DNMT3B    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:108376 ERBB2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:109552 HSP90AA1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:113743 BioGRID:109540 HSPA4    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:113743 BioGRID:230994 Lrrc41    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113743 BioGRID:110815 NEDD8    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-crystal Structure 
    BioGRID:113743 BioGRID:110906 NOS2    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity 
    BioGRID:113743 BioGRID:111426 POLR2A    BioGRID  PubMed Biochemical Activity 
    BioGRID:113743 BioGRID:115301 RBX1    BioGRID  PubMed Affinity Capture-Western; Co-crystal Structure; Two-hybrid 
    BioGRID:113743 BioGRID:114977 RNF7    BioGRID  PubMed Two-hybrid 
    BioGRID:113743 BioGRID:207980 Rbx1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:113743 BioGRID:202921 Rnf7    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:112393 SKP2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:114362 SOCS2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:114719 SOCS6    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:198719 Socs1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113743 BioGRID:112783 TCEB1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:113743 BioGRID:112785 TCEB2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:113743 BioGRID:249109 Tceb1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:249665 Tceb2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113743 BioGRID:247593 Tceb3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:113743 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113743 BioGRID:113269 VHL    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113743 BioGRID:219684 Wsb1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113743 BioGRID:1205539 vif    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    • Adaptive Immune System, organism-specific biosystem (from REACTOME)
      Adaptive Immune System, organism-specific biosystemAdaptive immunity refers to antigen-specific immune response efficiently involved in clearing the pathogens. The adaptive immune system is comprised of B and T lymphocytes that express receptors with...
    • Antigen processing: Ubiquitination & Proteasome degradation, organism-specific biosystem (from REACTOME)
      Antigen processing: Ubiquitination & Proteasome degradation, organism-specific biosystemIntracellular foreign or aberrant host proteins are cleaved into peptide fragments of a precise size, such that they can be loaded on to class I MHC molecules and presented externally to cytotoxic T ...
    • Class I MHC mediated antigen processing & presentation, organism-specific biosystem (from REACTOME)
      Class I MHC mediated antigen processing & presentation, organism-specific biosystemMajor histocompatibility complex (MHC) class I molecules play an important role in cell mediated immunity by reporting on intracellular events such as viral infection, the presence of intracellular b...
    • Disease, organism-specific biosystem (from REACTOME)
      Disease, organism-specific biosystemBiological processes are captured in Reactome by identifying the molecules (DNA, RNA, protein, small molecules) involved in them and describing the details of their interactions. From this molecular ...
    • ECS complex, organism-specific biosystem (from KEGG)
      ECS complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
    • ECS complex, conserved biosystem (from KEGG)
      ECS complex, conserved biosystemStructural complex; Genetic information processing; Ubiquitin system
    • HIV Infection, organism-specific biosystem (from REACTOME)
      HIV Infection, organism-specific biosystemThe global pandemic of Human Immunodeficiency Virus (HIV) infection has resulted in tens of millions of people infected by the virus and millions more affected. UNAIDS estimates around 40 million ...
    • Host Interactions of HIV factors, organism-specific biosystem (from REACTOME)
      Host Interactions of HIV factors, organism-specific biosystemLike all viruses, HIV-1 must co-opt the host cell macromolecular transport and processing machinery. HIV-1 Vpr and Rev proteins play key roles in this co-optation. Efficient HIV-1 replication likewis...
    • Immune System, organism-specific biosystem (from REACTOME)
      Immune System, organism-specific biosystemHumans are exposed to millions of potential pathogens daily, through contact, ingestion, and inhalation. Our ability to avoid infection depends on the adaptive immune system and during the first crit...
    • Signal Transduction, organism-specific biosystem (from REACTOME)
      Signal Transduction, organism-specific biosystemSignal transduction is a process in which extracellular signals elicit changes in cell state and activity. Transmembrane receptors sense changes in the cellular environment by binding ligands, such a...
    • Signaling by ERBB2, organism-specific biosystem (from REACTOME)
      Signaling by ERBB2, organism-specific biosystemERBB2, also known as HER2 or NEU, is a receptor tyrosine kinase (RTK) belonging to the EGFR family. ERBB2 possesses an extracellular domain that does not bind any known ligand, contrary to other EGFR...
    • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
      Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
    • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
      Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
    • Vif-mediated degradation of APOBEC3G, organism-specific biosystem (from REACTOME)
      Vif-mediated degradation of APOBEC3G, organism-specific biosystemThe HIV-1 accessory protein Vif (Viral infectivity factor) is required for the efficient infection of primary cell populations (e.g., lymphocytes and macrophages) and ââ?¬Å?non-permissiveââ?¬Â? cel...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    calcium channel activity TAS
    Traceable Author Statement
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    G1/S transition of mitotic cell cycle TAS
    Traceable Author Statement
    more info
    PubMed 
    calcium ion transmembrane transport TAS
    Traceable Author Statement
    more info
    PubMed 
    cell cycle arrest TAS
    Traceable Author Statement
    more info
    PubMed 
    cell proliferation TAS
    Traceable Author Statement
    more info
    PubMed 
    cytosolic calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
     
    induction of apoptosis by intracellular signals TAS
    Traceable Author Statement
    more info
    PubMed 
    interspecies interaction between organisms IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of cell proliferation TAS
    Traceable Author Statement
    more info
    PubMed 
    response to osmotic stress IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    viral reproduction TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cullin-RING ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    membrane fraction IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cullin-5
    Names
    cullin-5
    CUL-5
    Vasopressin-activated calcium-mobilizing receptor-1
    vasopressin-activated calcium-mobilizing receptor 1
    Cullin-5 (vasopressin-activated calcium-mobilizing receptor-1)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_003478.3NP_003469.2  cullin-5

      Status: VALIDATED

      Source sequence(s)
      AA099369, AA403092, AA471067, AK125294, BC017838, BC037203, BC063306, H01402
      Consensus CDS
      CCDS31668.1
      UniProtKB/Swiss-Prot
      Q93034
      Related
      ENSP00000376808, OTTHUMP00000232740, ENST00000393094, OTTHUMT00000389429
      Conserved Domains (3) summary
      smart00182
      Location:445586
      Blast Score: 511
      CULLIN; Cullin
      pfam00888
      Location:19673
      Blast Score: 1230
      Cullin; Cullin family
      cl11186
      Location:707774
      Blast Score: 224
      Cullin_Nedd8; Cullin protein neddylation domain

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p5 Primary Assembly

      Range
      107879408..107978488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      103804481..103903597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AP002433.5 (83348..92337) None
    genomic AP003307.3 (78468..168558) None
    genomic CH471065.1 EAW67101.1
      EAW67102.1
    mRNA AA099369.1 None
    mRNA AA403092.1 None
    mRNA AA471067.1 None
    mRNA AF017061.1 AAB70253.1
    mRNA AF327710.1 AAK07472.1
    mRNA AK125294.1 None
    mRNA AK292575.1 BAF85264.1
    mRNA BC017838.1 None
    mRNA BC037203.1 None
    mRNA BC063306.1 AAH63306.1
    mRNA H01402.1 None
    mRNA X81882.1 CAA57465.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93034.4 GenPept UniProtKB/Swiss-Prot:Q93034

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