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    TRABD TraB domain containing [ Homo sapiens ]

    Gene ID: 80305, updated on 11-May-2012
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    Summary

    Official Symbol
    TRABDprovided by HGNC
    Official Full Name
    TraB domain containingprovided by HGNC
    Primary source
    HGNC:28805
    Locus tag
    RP3-402G11.12-004
    See related
    Ensembl:ENSG00000170638; HPRD:11450; Vega:OTTHUMG00000044644
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LP6054; PP2447; MGC110928
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    Genomic context

    Location :
    22q13.33
    Sequence :
    Chromosome: 22; NC_000022.10 (50624360..50638027)
    See TRABD in Epigenomics, MapViewer

    Chromosome 22 - NC_000022.10Genomic Context describing neighboring genes Neighboring gene Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) Neighboring gene pannexin 2 Neighboring gene selenoprotein O Neighboring gene tubulin, gamma complex associated protein 6

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Systematic and quantitative assessment of the ubiquitin-modified proteome. Kim W, et al. Mol Cell, 2011 Oct 21. PMID 21906983.
    2. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. Danielsen JM, et al. Mol Cell Proteomics, 2011 Mar. PMID 21139048.
    3. Network organization of the human autophagy system. Behrends C, et al. Nature, 2010 Jul 1. PMID 20562859.
    4. Large-scale analysis of the human ubiquitin-related proteome. Matsumoto M, et al. Proteomics, 2005 Nov. PMID 16196087.
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334.

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Phenotypes

    Review eQTL and phenotype association data in this region using PheGenI

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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:123218 BioGRID:114226 BECN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:123218 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
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    General gene information

    Markers

    Genotypes

    Homology

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    General protein information

    Preferred Names
    traB domain-containing protein
    Names
    traB domain-containing protein
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    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025204.2 → NP_079480.2  traB domain-containing protein

      Status: PROVISIONAL

      Source sequence(s)
      AL449244
      Consensus CDS
      CCDS14086.1
      UniProtKB/Swiss-Prot
      Q9H4I3
      Related
      ENSP00000305664, OTTHUMP00000196711, ENST00000303434, OTTHUMT00000316987
      Conserved Domains (1) summary
      cl12050
      Location:62 – 275
      Blast Score: 302
      TraB; TraB family

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000022.10 Reference GRCh37.p5 Primary Assembly

      Range
      50624360..50638027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000154.1 Alternate HuRef

      Range
      33529129..33535748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AL022328.21 (86085..99752) None
    genomic CH471138.1 EAW73497.1
      EAW73498.1
      EAW73499.1
      EAW73500.1
      EAW73501.1
      EAW73502.1
    genomic DQ529300.1 ABF71986.1
    mRNA AF218001.1 AAG17243.1
    mRNA AK024447.1 BAB15737.1
    mRNA AK292050.1 BAF84739.1
    mRNA AL449244.1 CAC15001.1
    mRNA AY203945.1 AAP34468.1
    mRNA BC012445.1 AAH12445.1
    mRNA BC093029.1 AAH93029.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6XYC5 GenPept UniProtKB/TrEMBL:Q6XYC5
    Q9H4I3.1 GenPept UniProtKB/Swiss-Prot:Q9H4I3
    Q9HBQ3 GenPept UniProtKB/TrEMBL:Q9HBQ3
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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