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sowahd sosondowah ankyrin repeat domain family d [ Danio rerio (zebrafish) ]

Gene ID: 799521, updated on 27-Mar-2024

Summary

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Official Symbol
sowahdprovided by ZNC
Official Full Name
sosondowah ankyrin repeat domain family dprovided by ZNC
Primary source
ZFIN:ZDB-GENE-120215-42
See related
Ensembl:ENSDARG00000087152 AllianceGenome:ZFIN:ZDB-GENE-120215-42
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human SOWAHD (sosondowah ankyrin repeat domain family member D). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (33329407..33331494)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (32988996..32991180)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene RAB41, member RAS oncogene family Neighboring gene septin 6 Neighboring gene ribosomal protein L39 Neighboring gene UPF3B regulator of nonsense mediated mRNA decay

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of vascular and hematopoietic genes downstream of etsrp by deep sequencing in zebrafish. Gomez G, et al. PLoS One, 2012. PMID 22438865, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ankyrin repeat domain-containing protein SOWAHD
Names
ankrd58
ankyrin repeat domain-containing protein SOWAHC-like
sosondowah ankyrin repeat domain family member D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    33329407..33331494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021481216.1 → XP_021336891.1  ankyrin repeat domain-containing protein SOWAHD

    UniProtKB/TrEMBL
    A0A0R4IMZ4, A0A8M9QL15
    Related
    ENSDARP00000136796.1, ENSDART00000171090.2
    Conserved Domains (2) summary
    cd00204
    Location:175 → 294
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:201 → 238
    ANK; ANK repeat [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394917.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    293276..295363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001339829.6 → XP_001339865.1  ankyrin repeat domain-containing protein SOWAHD

    UniProtKB/TrEMBL
    A0A0R4IMZ4, A0A8M9QL15
    Conserved Domains (2) summary
    cd00204
    Location:175 → 294
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:201 → 238
    ANK; ANK repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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