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    CCDC102B coiled-coil domain containing 102B [ Homo sapiens ]

    Gene ID: 79839, updated on 11-May-2012
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    Summary

    Official Symbol
    CCDC102Bprovided by HGNC
    Official Full Name
    coiled-coil domain containing 102Bprovided by HGNC
    Primary source
    HGNC:26295
    See related
    Ensembl:ENSG00000150636; HPRD:08038; Vega:OTTHUMG00000132808
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    AN; ACY1L; HsT1731; C18orf14; FLJ23594; MGC161726; MGC161728; DKFZp434K1426; DKFZp686I08254
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    Genomic context

    Location :
    18q22.1
    Sequence :
    Chromosome: 18; NC_000018.9 (66382491..66722426)
    See CCDC102B in Epigenomics, MapViewer

    Chromosome 18 - NC_000018.9Genomic Context describing neighboring genes Neighboring gene aldo-keto reductase family 1, member B10 (aldose reductase) pseudogene Neighboring gene thioredoxin-related transmembrane protein 3 Neighboring gene uncharacterized LOC100505756 Neighboring gene succinate dehydrogenase complex, subunit C pseudogene 1 Neighboring gene aminoacylase 1 pseudogene Neighboring gene docking protein 6 Neighboring gene CD226 molecule

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. Rose JE, et al. Mol Med, 2010 Jul-Aug. PMID 20379614.
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560.
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334.
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039.
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932.

    See all (8) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
      Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
    Submit: New GeneRIF Correction
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    Phenotypes

    Review eQTL and phenotype association data in this region using PheGenI

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    General gene information

    Markers

    Genotypes

    Homology

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    General protein information

    Preferred Names
    coiled-coil domain-containing protein 102B
    Names
    coiled-coil domain-containing protein 102B
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    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093729.1 → NP_001087198.1  coiled-coil domain-containing protein 102B

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC022035, AK225597, BC126450, BQ003970, DB020599, DC382329
      Consensus CDS
      CCDS11996.2
      UniProtKB/TrEMBL
      A1A4H1
      Conserved Domains (1) summary
      TIGR02169
      Location:242 – 480
      Blast Score: 111
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    2. NM_024781.2 → NP_079057.2  coiled-coil domain-containing protein 102B

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK027247, CK823962, CR749520, DC380577
      Consensus CDS
      CCDS11996.2
      UniProtKB/Swiss-Prot
      Q68D86
      Related
      ENSP00000353377, OTTHUMP00000163692, ENST00000360242, OTTHUMT00000256225
      Conserved Domains (1) summary
      TIGR02169
      Location:242 – 480
      Blast Score: 111
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000018.9 Reference GRCh37.p5 Primary Assembly

      Range
      66382491..66722426
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000150.1 Alternate HuRef

      Range
      63100452..63441336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC011087.6 (74426..119928) None
    genomic AC022035.5 None
    genomic AC040896.9 (174364..189307) None
    genomic AC096708.3 None
    genomic CH471117.1 EAW66511.1
      EAW66512.1
    mRNA AK027247.1 BAB15706.1
    mRNA AK057282.1 None
    mRNA AK091108.1 None
    mRNA AK225597.1 None
    mRNA AK308114.1 None
    mRNA AL833863.1 CAD38721.2
    mRNA BC056269.1 AAH56269.1
    mRNA BC126448.1 AAI26449.1
    mRNA BC126450.1 AAI26451.1
    mRNA BQ003970.1 None
    mRNA CK823962.1 None
    mRNA CR749520.1 CAH18334.2
    mRNA DB020599.1 None
    mRNA DC380577.1 None
    mRNA DC382329.1 None
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q68D86.4 GenPept UniProtKB/Swiss-Prot:Q68D86
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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