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    BBS10 Bardet-Biedl syndrome 10 [ Homo sapiens ]

    Gene ID: 79738, updated on 11-May-2012

    Summary

    Official Symbol
    BBS10provided by HGNC
    Official Full Name
    Bardet-Biedl syndrome 10provided by HGNC
    Primary source
    HGNC:26291
    See related
    Ensembl:ENSG00000179941; HPRD:08036; MIM:610148; Vega:OTTHUMG00000147352
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C12orf58; FLJ23560
    Summary
    This gene is a member of the Bardet-Biedl syndrome (BBS) gene family. Bardet-Biedl syndrome is an autosomal recessive disorder characterized by progressive retinal degeneration, obesity, polydactyly, renal malformation and mental retardation. The proteins encoded by BBS gene family members are structurally diverse and the similar phenotypes exhibited by mutations in BBS gene family members is likely due to their shared roles in cilia formation and function. Many BBS proteins localize to the basal bodies, ciliary axonemes, and pericentriolar regions of cells. BBS proteins may also be involved in intracellular trafficking via microtubule-related transport. The protein encoded by this gene is likely not a ciliary protein but rather has distant sequence homology to type II chaperonins. As a molecular chaperone, this protein may affect the folding or stability of other ciliary or basal body proteins. Inhibition of this protein's expression impairs ciliogenesis in preadipocytes. Mutations in this gene cause Bardet-Biedl syndrome type 10. [provided by RefSeq, Jan 2010]

    Genomic context

    Location :
    12q21.2
    Sequence :
    Chromosome: 12; NC_000012.11 (76738266..76742222, complement)
    See BBS10 in Epigenomics, MapViewer

    Chromosome 12 - NC_000012.11Genomic Context describing neighboring genes Neighboring gene density-regulated protein pseudogene Neighboring gene nucleosome assembly protein 1-like 1 Neighboring gene reticulon 4 interacting protein 1 pseudogene Neighboring gene oxysterol binding protein-like 8 Neighboring gene ribosomal protein L7a pseudogene 9

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Bardet-Biedl syndrome 10

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Bardet-Biedl syndrome (BBS) is characterized by rod-cone dystrophy (>90%), truncal obesity (72%), postaxial polydactyly, cognitive impairment, male hypogonadotrophic hypogonadism, complex female genitourinary malformations, and renal abnormalities. The visual prognosis for children with BBS is poor. Night blindness is usually evident by age seven to eight years; the mean age of legal blindness is 15.5 years. Birth weight is usually normal, but significant weight gain begins within the first year and becomes a lifelong issue for most individuals. A majority of individuals have significant learning difficulties, but only a minority have severe impairment on IQ testing. Renal disease is a major cause of morbidity and mortality.
    Diagnosis Testing
    The diagnosis of BBS is established by clinical findings. Fourteen genes are known to be associated with BBS: BBS1, BBS2, ARL6 (BBS3), BBS4, BBS5, MKKS (BBS6), BBS7, TTC8 (BBS8), BBS9, BBS10, TRIM32 (BBS11), BBS12, MKS1 (BBS13), and CEP290 (BBS14). Mutations in WDPCP and SDCCAG8 may be associated with BBS15 and BBS16, respectively. Molecular genetic testing is available on a clinical basis for all 14 known BBS-related genes and for WDPCP, mutations in which may be associated with BBS.
    Genetic Counseling
    BBS is typically inherited in an autosomal recessive manner. Both interfamilial and intrafamilial phenotypic variability exists. In some families, mutations in more than one BBS locus may result in a clinical phenotype of BBS. However, such families are difficult to identify and by previous estimations may account for less than 10% of all BBS. It is thus prudent to use the following autosomal recessive risk figures when providing genetic counseling: at conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing is possible if the disease-causing mutations in a family are known. Prenatal diagnosis using second-trimester ultrasound examination to detect anomalies associated with BBS such as postaxial polydactyly and renal cysts has been reported. Few laboratories offering molecular genetic testing for prenatal diagnosis of BBS are listed in the GeneTestsTM Laboratory Directory; however, for pregnancies at increased risk in families in which the disease-causing mutations have been identified, prenatal testing may be available through laboratories offering custom prenatal testing.
    References

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:122851 BioGRID:107838 CSNK1E    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:108765 FRZB    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:115330 HDAC6    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:112748 MAP3K7    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:111583 MAPK6    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:117086 MAPK8IP2    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:109407 NR4A1    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:111719 PTK2    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:111856 RASA1    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:111929 RGS2    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:114160 TNFSF11    BioGRID  PubMed Two-hybrid 
    BioGRID:122851 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:122851 BioGRID:121317 YAE1D1    BioGRID  PubMed Two-hybrid 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular protein metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    chaperone-mediated protein complex assembly IMP
    Inferred from Mutant Phenotype
    more info
     
    nonmotile primary cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    photoreceptor cell maintenance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    retina homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cilium IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Bardet-Biedl syndrome 10 protein
    Names
    Bardet-Biedl syndrome 10 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016357.1 RefSeqGene

      Range
      5001..8957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_024685.3NP_078961.3  Bardet-Biedl syndrome 10 protein

      Status: REVIEWED

      Source sequence(s)
      AI673014, BC013795, BC026355, DA095453, DR155669
      Consensus CDS
      CCDS9014.2
      UniProtKB/Swiss-Prot
      Q8TAM1
      Related
      ENSP00000376946, OTTHUMP00000190861, ENST00000393262, OTTHUMT00000303983
      Conserved Domains (1) summary
      cl02777
      Location:11246
      Blast Score: 147
      chaperonin_like; chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I ...

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000012.11 Reference GRCh37.p5 Primary Assembly

      Range
      76738266..76742222, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000144.1 Alternate HuRef

      Range
      73790430..73794386, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC117491.9 (61794..65496) None
    genomic CH471054.1 EAW97322.1
      EAW97323.1
    genomic GN088052.1 CAX86889.1
    mRNA AI673014.1 None
    mRNA AK027213.1 BAB15695.1
    mRNA AK225585.1 None
    mRNA AK304178.1 BAH14128.1
    mRNA BC013795.1 AAH13795.1
    mRNA BC026355.1 AAH26355.2
    mRNA DA095453.1 None
    mRNA DR155669.1 None
    other-genetic JF432744.1 ADZ15961.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8TAM1.2 GenPept UniProtKB/Swiss-Prot:Q8TAM1

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