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    RNASEH2B ribonuclease H2, subunit B [ Homo sapiens (human) ]

    Gene ID: 79621, updated on 5-May-2013
    Official Symbol
    RNASEH2Bprovided by HGNC
    Official Full Name
    ribonuclease H2, subunit Bprovided by HGNC
    Primary source
    HGNC:25671
    See related
    Ensembl:ENSG00000136104; MIM:610326; Vega:OTTHUMG00000016937
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    AGS2; DLEU8
    Summary
    RNase H2 is composed of a single catalytic subunit (A) and two non-catalytic subunits (B and C) and specifically degrades the RNA of RNA:DNA hybrids. The protein encoded by this gene is the non-catalytic B subunit of RNase H2, which is thought to play a role in DNA replication. Multiple transcript variants encoding different isoforms have been found for this gene. Defects in this gene are a cause of Aicardi-Goutieres syndrome type 2 (AGS2). [provided by RefSeq, Nov 2008]
    Location :
    13q14.3
    Sequence :
    Chromosome: 13; NC_000013.10 (51483814..51544596)
    See RNASEH2B in Epigenomics, MapViewer

    Chromosome 13 - NC_000013.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L34 pseudogene 26 Neighboring gene deleted in lymphocytic leukemia, 7 Neighboring gene DLEU7 antisense RNA 1 Neighboring gene RNASEH2B antisense RNA 1 Neighboring gene guanylate cyclase 1, soluble, beta 2 (pseudogene) Neighboring gene long intergenic non-protein coding RNA 371

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Aicardi Goutieres syndrome 2

    Summary from GeneReviews: Aicardi-Goutieres Syndrome Go to GeneReviews

    Disease Characteristics
    Aicardi-Goutieres syndrome (AGS) is an early-onset encephalopathy that usually, but not always, results in severe intellectual and physical handicap. A subgroup of infants with AGS present at birth with abnormal neurologic findings, hepatosplenomegaly, elevated liver enzymes, and thrombocytopenia, a picture highly reminiscent of congenital infection. Otherwise, most affected infants present at variable times after the first few days of life, frequently after a period of apparently normal development. Typically, they demonstrate the subacute onset of a severe encephalopathy characterized by extreme irritability, intermittent sterile pyrexias, loss of skills, and slowing of head growth. As many as 40% have chilblain skin lesions on the fingers, toes, and ears. It is becoming apparent that atypical, milder cases of AGS exist and thus the true extent of the phenotype associated with mutations in the AGS-related genes is not yet known.
    Diagnosis Testing
    The diagnosis can be made with confidence in individuals with typical clinical findings, characteristic abnormalities on cranial CT (calcification of the basal ganglia and white matter) and MRI (leukodystrophic changes), and identifiable mutations in one of the five known related genes. Mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, and SAMHD1 are identified in approximately 90% of individuals with characteristic clinical and radiologic findings of AGS; such testing is clinically available. At least one other gene in which mutations are disease causing is postulated but remains unknown.
    Genetic Counseling
    Most AGS is inherited in an autosomal recessive manner; in a few instances, AGS can result from de novo autosomal dominant mutations in TREX1. At conception, each sib of an affected individual with autosomal recessive AGS has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Most individuals with AGS do not reproduce. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutation(s) in the family have been identified.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:122751 BioGRID:123548 ANP32E    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:122751 BioGRID:109569 DNAJB1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:122751 BioGRID:110952 NRAS    BioGRID  PubMed Co-fractionation 
    BioGRID:122751 BioGRID:111894 RDX    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:122751 BioGRID:115789 RNASEH2A    BioGRID  PubMed Co-fractionation 
    BioGRID:122751 BioGRID:123916 RNASEH2C    BioGRID  PubMed Co-fractionation 
    BioGRID:122751 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:122751 BioGRID:119006 UBQLN2    BioGRID  PubMed Affinity Capture-MS 
    • DNA replication, organism-specific biosystem (from KEGG)
      DNA replication, organism-specific biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
    • DNA replication, conserved biosystem (from KEGG)
      DNA replication, conserved biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...

    Markers

    Homology

    Clone Names

    • FLJ11712

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    RNA catabolic process IDA
    Inferred from Direct Assay
    more info
     
    Component Evidence Code Pubs
    NOT nucleolus IDA
    Inferred from Direct Assay
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
     
    ribonuclease H2 complex IDA
    Inferred from Direct Assay
    more info
     
    Preferred Names
    ribonuclease H2 subunit B
    Names
    ribonuclease H2 subunit B
    RNase H2 subunit B
    ribonuclease HI subunit B
    deleted in lymphocytic leukemia 8
    Aicardi-Goutieres syndrome 2 protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009055.1 RefSeqGene

      Range
      4923..65705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001142279.2NP_001135751.1  ribonuclease H2 subunit B isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate splice pattern in the 3' coding region, compared to variant 1. The resulting protein (isoform 2) has a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AL137881, CA309004
      Consensus CDS
      CCDS45047.1
      UniProtKB/TrEMBL
      G3XAJ1
      Related
      ENSP00000389877, ENST00000422660
      Conserved Domains (1) summary
      cd09270
      Location:17187
      Blast Score: 324
      RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids
    2. NM_024570.3NP_078846.2  ribonuclease H2 subunit B isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (1).
      Source sequence(s)
      AL137881, BC036744
      Consensus CDS
      CCDS9425.1
      UniProtKB/Swiss-Prot
      Q5TBB1
      UniProtKB/TrEMBL
      Q8N451
      Related
      ENSP00000337623, OTTHUMP00000018436, ENST00000336617, OTTHUMT00000045006
      Conserved Domains (2) summary
      cd09270
      Location:17187
      Blast Score: 308
      RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids
      cl09705
      Location:247302
      Blast Score: 145
      RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000013.10 Reference GRCh37.p10 Primary Assembly

      Range
      51483814..51544596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000145.1 Alternate HuRef

      Range
      32272725..32333508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018924.1 Alternate CHM1_1.0

      Range
      32422681..32483454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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