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CHPF chondroitin polymerizing factor [ Homo sapiens (human) ]

Gene ID: 79586, updated on 26-May-2016
Official Symbol
CHPFprovided by HGNC
Official Full Name
chondroitin polymerizing factorprovided by HGNC
Primary source
HGNC:HGNC:24291
See related
Ensembl:ENSG00000123989 HPRD:10829; MIM:610405; Vega:OTTHUMG00000058929
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CSS2; CHSY2
Orthologs
Location:
2q35
Exon count:
6
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 2 NC_000002.12 (219538947..219543765, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (220403669..220408487, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373885 Neighboring gene GDP-mannose pyrophosphorylase A Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene transmembrane protein 198 Neighboring gene microRNA 3132 Neighboring gene obscurin-like 1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ22678

Gene Ontology Provided by GOA

Process Evidence Code Pubs
chondroitin sulfate biosynthetic process TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 
Golgi membrane TAS
Traceable Author Statement
more info
 
cytosol IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
chondroitin sulfate synthase 2
Names
N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase II
N-acetylgalactosaminyltransferase 2
chondroitin glucuronyltransferase 2
chondroitin-polymerizing factor
glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase II
NP_001182660.1
NP_078812.2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195731.1NP_001182660.1  chondroitin sulfate synthase 2 isoform 2

    See identical proteins and their annotated locations for NP_001182660.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' terminal exon compared to variant 1, resulting in translation initiation from an in-frame downstream AUG, and an isoform (2) with a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AB086063, AK302124, BC021223, DC341343
    Consensus CDS
    CCDS56169.1
    UniProtKB/Swiss-Prot
    Q8IZ52
    Related
    ENSP00000445571, ENST00000535926
    Conserved Domains (2) summary
    pfam05679
    Location:100600
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:32142
    Galactosyl_T; Galactosyltransferase
  2. NM_024536.5NP_078812.2  chondroitin sulfate synthase 2 isoform 1

    See identical proteins and their annotated locations for NP_078812.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AB086063, AY358403, BC021223
    Consensus CDS
    CCDS2443.1
    UniProtKB/Swiss-Prot
    Q8IZ52
    Related
    ENSP00000243776, OTTHUMP00000064873, ENST00000243776, OTTHUMT00000130268
    Conserved Domains (2) summary
    pfam05679
    Location:262762
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:194304
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p2 Primary Assembly

    Range
    219538947..219543765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011511838.1XP_011510140.1  

    Conserved Domains (1) summary
    pfam05679
    Location:5471
    CHGN; Chondroitin N-acetylgalactosaminyltransferase

Alternate CHM1_1.1

Genomic

  1. NC_018913.2 Alternate CHM1_1.1

    Range
    220409491..220414309 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)