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Fbxo34 F-box protein 34 [ Mus musculus (house mouse) ]

Gene ID: 78938, updated on 28-May-2016
Official Symbol
Fbxo34provided by MGI
Official Full Name
F-box protein 34provided by MGI
Primary source
MGI:MGI:1926188
See related
Ensembl:ENSMUSG00000037536
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2900057B08Rik; 5830426G16Rik
Orthologs
Location:
14; 14 C1
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 14 NC_000080.6 (47472561..47531962)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (48092236..48151637)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene discs, large (Drosophila) homolog-associated protein 5 Neighboring gene ribosomal protein S15 pseudogene Neighboring gene predicted gene, 35166 Neighboring gene autophagy related 14 Neighboring gene small nuclear ribonucleoprotein polypeptide F pseudogene

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001146085.1NP_001139557.1  F-box only protein 34 isoform 2

    See identical proteins and their annotated locations for NP_001139557.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) includes two alternate segments which result in the use of a downstream start codon, compared to variant 1. Variants 2 and 3 encode the same protein (isoform 2) which is shorter when it is compared to isoform 1.
    Source sequence(s)
    AC123665, AK020018, CB575943
    Consensus CDS
    CCDS49471.1
    UniProtKB/Swiss-Prot
    Q80XI1
    Related
    ENSMUSP00000131708, ENSMUST00000163324
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  2. NM_001146086.1NP_001139558.1  F-box only protein 34 isoform 2

    See identical proteins and their annotated locations for NP_001139558.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) includes an alternate segment which results in the use of a downstream start codon, compared to variant 1. Variants 2 and 3 encode the same protein (isoform 2) which is shorter when it is compared to isoform 1.
    Source sequence(s)
    AK020018, BB703607, BC049155
    Consensus CDS
    CCDS49471.1
    UniProtKB/Swiss-Prot
    Q80XI1
    Related
    ENSMUSP00000132271, ENSMUST00000168833
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  3. NM_030236.3NP_084512.2  F-box only protein 34 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest protein (isoform 1).
    Source sequence(s)
    AK020018, BB703607, BC049155
    Consensus CDS
    CCDS26988.1
    UniProtKB/Swiss-Prot
    Q80XI1
    UniProtKB/TrEMBL
    E9QM55
    Related
    ENSMUSP00000044675, ENSMUST00000043112
    Conserved Domains (1) summary
    pfam00646
    Location:612644
    F-box; F-box domain

RNA

  1. NR_027414.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) contains four alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK013711, AK020018, BB703607, BC049155

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p3 C57BL/6J

    Range
    47472561..47531962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006519710.1XP_006519773.1  

    See identical proteins and their annotated locations for XP_006519773.1

    Conserved Domains (1) summary
    pfam00646
    Location:581613
    F-box; F-box domain
  2. XM_006519722.1XP_006519785.1  

    See identical proteins and their annotated locations for XP_006519785.1

    UniProtKB/Swiss-Prot
    Q80XI1
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  3. XM_011245229.1XP_011243531.1  

    See identical proteins and their annotated locations for XP_011243531.1

    UniProtKB/Swiss-Prot
    Q80XI1
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  4. XM_006519714.1XP_006519777.1  

    See identical proteins and their annotated locations for XP_006519777.1

    UniProtKB/Swiss-Prot
    Q80XI1
    Related
    ENSMUSP00000130036, ENSMUST00000165714
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  5. XM_006519713.1XP_006519776.1  

    See identical proteins and their annotated locations for XP_006519776.1

    UniProtKB/Swiss-Prot
    Q80XI1
    Related
    ENSMUSP00000093634, ENSMUST00000095941
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  6. XM_006519720.1XP_006519783.1  

    See identical proteins and their annotated locations for XP_006519783.1

    UniProtKB/Swiss-Prot
    Q80XI1
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  7. XM_006519723.2XP_006519786.1  

    See identical proteins and their annotated locations for XP_006519786.1

    UniProtKB/Swiss-Prot
    Q80XI1
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  8. XM_006519717.2XP_006519780.1  

    See identical proteins and their annotated locations for XP_006519780.1

    UniProtKB/Swiss-Prot
    Q80XI1
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  9. XM_006519712.2XP_006519775.1  

    See identical proteins and their annotated locations for XP_006519775.1

    Conserved Domains (1) summary
    pfam00646
    Location:581613
    F-box; F-box domain
  10. XM_006519719.1XP_006519782.1  

    See identical proteins and their annotated locations for XP_006519782.1

    UniProtKB/Swiss-Prot
    Q80XI1
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain
  11. XM_006519718.2XP_006519781.1  

    See identical proteins and their annotated locations for XP_006519781.1

    UniProtKB/Swiss-Prot
    Q80XI1
    Conserved Domains (1) summary
    pfam00646
    Location:561593
    F-box; F-box domain

Alternate Mm_Celera

Genomic

  1. AC_000036.1 Alternate Mm_Celera

    Range
    43661518..43720779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)