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Bcav_0664 DNA polymerase LigD, polymerase domain-containing protein [ Beutenbergia cavernae DSM 12333 ]

Gene ID: 7858465, updated on 6-Jul-2014
Gene symbol
Bcav_0664
Gene description
DNA polymerase LigD, polymerase domain-containing protein
Locus tag
Bcav_0664
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Beutenbergia cavernae DSM 12333 (strain: DSM 12333)
Lineage
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Beutenbergiaceae; Beutenbergia
Sequence:
NC_012669.1 (740917..741921)

NC_012669.1Genomic Context describing neighboring genes Neighboring gene thymidylate kinase Neighboring gene ATPase AAA Neighboring gene TAP domain-containing protein Neighboring gene hypothetical protein Neighboring gene tRNA Neighboring gene hypothetical protein Neighboring gene MerR family transcriptional regulator

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

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    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
DNA polymerase LigD, polymerase domain-containing protein
YP_002880688.1
  • PFAM: Eukaryotic and archaeal DNA primase small subunit~TIGRFAM: DNA ligase D; DNA polymerase LigD, polymerase domain

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012669.1 

    Range
    740917..741921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002880688.1 DNA polymerase LigD, polymerase domain-containing protein [Beutenbergia cavernae DSM 12333]

    See proteins identical to YP_002880688.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C5BY32
    Conserved Domains (1) summary
    cl01287
    Location:35264
    AE_Prim_S_like; AE_Prim_S_like: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. The replication machineries of A/Es are distinct from that of bacteria. Primases are DNA-dependent RNA polymerases which synthesis ...