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    ALMS1 Alstrom syndrome 1 [ Homo sapiens (human) ]

    Gene ID: 7840, updated on 9-Jun-2013
    Official Symbol
    ALMS1provided by HGNC
    Official Full Name
    Alstrom syndrome 1provided by HGNC
    Primary source
    HGNC:428
    See related
    Ensembl:ENSG00000116127; HPRD:06023; MIM:606844; Vega:OTTHUMG00000152812
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ALSS
    Summary
    This gene encodes a protein containing a large tandem-repeat domain. The mouse ortholog of this gene has been shown to function in ciliogenesis in inner medullary collecting duct cells. Mutations in this gene have been associated with Alstrom syndrome. Alternative splice variants have been described but their full length sequences have not been determined.[provided by RefSeq, Mar 2009]
    Location :
    2p13
    Sequence :
    Chromosome: 2; NC_000002.11 (73612886..73837046)
    See ALMS1 in Epigenomics, MapViewer

    Chromosome 2 - NC_000002.11Genomic Context describing neighboring genes Neighboring gene early growth response 4 Neighboring gene ribosomal protein SA pseudogene 28 Neighboring gene guanine nucleotide binding protein (G protein), gamma 5 pseudogene 4 Neighboring gene Alstrom syndrome 1 pseudogene Neighboring gene N-acetyltransferase 8 (GCN5-related, putative)

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Alstrom syndrome

    Summary from GeneReviews: Alstrom Syndrome Go to GeneReviews

    Disease Characteristics
    Alstrom syndrome is characterized by cone-rod dystrophy, obesity, progressive sensorineural hearing impairment, dilated or restrictive cardiomyopathy, the insulin resistance syndrome, and multiple organ failure. Wide clinical variability is observed among affected individuals, even within the same family. Cone-rod dystrophy presents as progressive visual impairment, photophobia, and nystagmus usually starting between birth and age 15 months. Many individuals lose all perception of light by the end of the second decade, but a minority retain the ability to read large print into the third decade. Children usually have normal birth weight but develop truncal obesity during their first year. Progressive sensorineural hearing loss presents in the first decade in as many as 70% of individuals. Hearing loss may progress to the severe or moderately severe range (40-70 db) by the end of the first to second decade. Insulin resistance is typically accompanied by the skin changes of acanthosis nigricans, and proceeds to type 2 diabetes in the majority by the third decade. Nearly all demonstrate associated dyslipidemia. Other endocrine abnormalities can include hypothyroidism, hypogonadotropic hypogonadism in boys, and polycystic ovaries in girls. More than 60% of individuals with Alstrom syndrome develop cardiac failure as a result of dilated or restrictive cardiomyopathy. About 50% of individuals have delay in early developmental milestones; intelligence is normal. Liver involvement includes elevation of transaminases, steatosis, hepatosplenomegaly, and steatohepatitis. Portal hypertension and cirrhosis can lead to hepatic encephalopathy and life-threatening esophageal varices. Pulmonary dysfunction and severe renal disease may also develop. End-stage renal disease (ESRD) can occur as early as the late teens.
    Diagnosis Testing
    The diagnosis of Alstrom syndrome is based on clinical findings. Molecular genetic testing of ALMS1, the only gene in which mutations are known to cause Alstrom syndrome, is estimated to detect mutations in 70%-80% of individuals of northern European descent, and approximately 40% world-wide.
    Genetic Counseling
    Alstrom syndrome is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations have been identified in an affected family member.
    References
    Protein Gene Interaction Pubs
    pol gag-pol HIV-1 PR is identified to have a physical interaction with Alstrom syndrome 1 (ALMS1) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    Q8TCU4 MEGF10 protein MEGF10    HPRD  PubMed  
    BioGRID:113598 BioGRID:120432 CEP192    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113598 BioGRID:110169 LIG4    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:113598 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113598 BioGRID:1205538 gag-pol    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • KIAA0328, DKFZp686A118, DKFZp686D1828

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    G2/M transition of mitotic cell cycle TAS
    Traceable Author Statement
    more info
     
    apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    biological_process ND
    No biological Data available
    more info
     
    calcium-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
     
    cholesterol homeostasis IEA
    Inferred from Electronic Annotation
    more info
     
    cilium assembly IEA
    Inferred from Electronic Annotation
    more info
     
    developmental growth IEA
    Inferred from Electronic Annotation
    more info
     
    endosomal transport IMP
    Inferred from Mutant Phenotype
    more info
     
    epithelial cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    establishment of planar polarity IEA
    Inferred from Electronic Annotation
    more info
     
    fat cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    glucose homeostasis IEA
    Inferred from Electronic Annotation
    more info
     
    inner ear receptor stereocilium organization IEA
    Inferred from Electronic Annotation
    more info
     
    mitotic cell cycle TAS
    Traceable Author Statement
    more info
     
    negative regulation of multicellular organism growth IEA
    Inferred from Electronic Annotation
    more info
     
    ovulation IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of fat cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of stress fiber assembly IMP
    Inferred from Mutant Phenotype
    more info
     
    retinal rod cell development IEA
    Inferred from Electronic Annotation
    more info
     
    sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
     
    spermatid development IEA
    Inferred from Electronic Annotation
    more info
     
    triglyceride metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    colocalizes_with centriole IDA
    Inferred from Direct Assay
    more info
     
    centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cilium IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    microtubule basal body IEA
    Inferred from Electronic Annotation
    more info
     
    spindle pole IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    Alstrom syndrome protein 1
    Names
    Alstrom syndrome protein 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011690.1 RefSeqGene

      Range
      5001..229167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_015120.4NP_055935.4  Alstrom syndrome protein 1

      Status: REVIEWED

      Source sequence(s)
      AC074008, AC092653, AC096546, AJ417593
      Consensus CDS
      CCDS42697.1
      UniProtKB/Swiss-Prot
      Q8TCU4
      Related
      ENSP00000264448, OTTHUMP00000202344, ENST00000264448, OTTHUMT00000327776

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000002.11 Reference GRCh37.p10 Primary Assembly

      Range
      73612886..73837046
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000134.1 Alternate HuRef

      Range
      73348377..73572081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018913.1 Alternate CHM1_1.0

      Range
      73477972..73702202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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