bcl6aa BCL6A transcription repressor a [Takifugu rubripes (torafugu)] - Gene

Summary

Gene symbol: bcl6aa
Gene description: BCL6A transcription repressor a
See related: Ensembl:ENSTRUG00000002214
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Takifugu rubripes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as: bcl6
Orthologs: human zebrafish all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 20

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
103	current	fTakRub1.2 (GCF_901000725.2)	20	NC_042304.1 (3471663..3484472, complement)
101	previous assembly	FUGU5 (GCF_000180615.1)	20	NC_018909.1 (1414431..1417622, complement)

Chromosome 20 - NC_042304.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The BCL-6 gene in torafugu was identified.(BCL6)
Title: Molecular cloning of the BCL-6 gene, a transcriptional repressor for B-cell differentiation, in torafugu (Takifugu rubripes).

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of cytokine production	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of immune system process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: B-cell lymphoma 6 protein

Names: B cell CLL/lymphoma 6; BCL6 transcription repressor

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001078601.1 → NP_001072069.1 B-cell lymphoma 6 protein

See identical proteins and their annotated locations for NP_001072069.1

Status: PROVISIONAL

Source sequence(s)

AB197694

UniProtKB/TrEMBL

H2RY60, Q5NRQ2

Related

ENSTRUP00000005081.3, ENSTRUT00000005111.3

Conserved Domains (5) summary

smart00225
Location:33 → 128

BTB; Broad-Complex, Tramtrack and Bric a brac

sd00017
Location:573 → 593

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00651
Location:22 → 126

BTB; BTB/POZ domain

pfam13465
Location:585 → 610

zf-H2C2_2; Zinc-finger double domain

pfam14963
Location:320 → 413

CAML; Calcium signal-modulating cyclophilin ligand