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SEQ_1610 formamidopyrimidine-DNA glycosylase [ Streptococcus equi subsp. equi 4047 ]

Gene ID: 7697031, discontinued on 9-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
SEQ_1610
Gene description
formamidopyrimidine-DNA glycosylase
Locus tag
SEQ_1610
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Streptococcus equi subsp. equi 4047 (strain: 4047)
Lineage
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012471.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: c1615972-1615883 HMMPfam hit to PF06827, Zinc finger found in FPG and IleRS, score 2e-10 inference = protein motif:PFAM:PF06827
  • Loc: c1616308-1616030 HMMPfam hit to PF06831, Formamidopyrimidine-DNA glycosylase H2, score 1.9e-42 inference = protein motif:PFAM:PF06831
  • Loc: c1616698-1616357 HMMPfam hit to PF01149, Formamidopyrimidine-DNA glycosylase N-, score 8.3e-51 inference = protein motif:PFAM:PF01149

General protein information

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Names
formamidopyrimidine-DNA glycosylase
YP_002746858.1
  • Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012471.1 Reference assembly

    Range
    1615880..1616773 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002746858.1 formamidopyrimidine-DNA glycosylase [Streptococcus equi subsp. equi 4047]

    Status: VALIDATED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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