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runx1t1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) [ Danio rerio (zebrafish) ]

Gene ID: 767809, updated on 19-Jul-2014
Official Symbol
runx1t1provided by ZNC
Official Full Name
runt-related transcription factor 1; translocated to, 1 (cyclin D-related)provided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-164
Locus tag
CH211-232J17.1
See related
Ensembl:ENSDARG00000003680
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
MTG8; wu:fi14b07; zgc:154044; si:ch211-232j17.1
Annotation information
Annotation category: partial on reference assembly
See runx1t1 in MapViewer
Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Zv9 (GCF_000002035.4) 19 NC_007130.5 (35116892..35147503)

Chromosome 19 - NC_007130.5Genomic Context describing neighboring genes Neighboring gene naked cuticle homolog 3, like Neighboring gene triple QxxK/R motif containing Neighboring gene si:ch73-302o18.2 Neighboring gene OTU domain containing 6B Neighboring gene peroxisomal biogenesis factor 1

Genomic Sequence:
NC_007130.5 chromosome 19 reference Zv9 Primary Assembly

Markers

Homology

Clone Names

  • MGC154044

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
protein CBFA2T1
Names
protein CBFA2T1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076776.3NP_001070244.2  protein CBFA2T1

    Status: PROVISIONAL

    Source sequence(s)
    CR735113, CR759910
    UniProtKB/TrEMBL
    Q1L8K2
    Related
    ENSDARP00000020377, ENSDART00000010294
    Conserved Domains (3) summary
    pfam08788
    Location:319385
    Blast Score: 341
    NHR2; NHR2 domain like
    pfam07531
    Location:100195
    Blast Score: 389
    TAFH; NHR1 homology to TAF
    pfam01753
    Location:497533
    Blast Score: 155
    zf-MYND; MYND finger

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zv9 Primary Assembly

Genomic

  1. NC_007130.5 

    Range
    35116892..35147503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)