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samd13 sterile alpha motif domain containing 13 [ Danio rerio (zebrafish) ]

Gene ID: 767772, updated on 27-Mar-2024

Summary

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Official Symbol
samd13provided by ZNC
Official Full Name
sterile alpha motif domain containing 13provided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-676
See related
Ensembl:ENSDARG00000062977 AllianceGenome:ZFIN:ZDB-GENE-060929-676
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153376
Summary
Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD13 (sterile alpha motif domain containing 13). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See samd13 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (8152850..8157495)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (8143011..8147656)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase-like family, member 7 Neighboring gene protein kinase, cAMP-dependent, catalytic, beta a Neighboring gene deoxyribonuclease II beta Neighboring gene urate oxidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Knockdown screening of chromatin binding and regulatory proteins in zebrafish identified Suz12b as a regulator of tfpia and an antithrombotic drug target. Raman R, et al. Sci Rep, 2021 Jul 27. PMID 34315984, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC153376

General protein information

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Preferred Names
sterile alpha motif domain-containing protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076739.2 → NP_001070207.1  sterile alpha motif domain-containing protein 13

    See identical proteins and their annotated locations for NP_001070207.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC124335, CF997862, CR931978, EH512876
    UniProtKB/TrEMBL
    A0A8M3B3W3, Q08C88
    Related
    ENSDARP00000086071.4, ENSDART00000091638.6
    Conserved Domains (2) summary
    cd09583
    Location:23 → 91
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    smart00454
    Location:23 → 79
    SAM; Sterile alpha motif

  2. NM_001168317.1 → NP_001161789.1  sterile alpha motif domain-containing protein 13

    See identical proteins and their annotated locations for NP_001161789.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC124335, CR931978, EH512876
    UniProtKB/TrEMBL
    A0A8M3B3W3, Q08C88
    Related
    ENSDARP00000123085.1, ENSDART00000138057.3
    Conserved Domains (2) summary
    cd09583
    Location:23 → 91
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    smart00454
    Location:23 → 79
    SAM; Sterile alpha motif

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    8152850..8157495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009305815.1 → XP_009304090.1  sterile alpha motif domain-containing protein 13 isoform X1

    See identical proteins and their annotated locations for XP_009304090.1

    UniProtKB/TrEMBL
    A0A8M3B3W3, Q08C88
    Conserved Domains (2) summary
    cd09583
    Location:23 → 91
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    smart00454
    Location:23 → 79
    SAM; Sterile alpha motif

  2. XM_005172827.2 → XP_005172884.1  sterile alpha motif domain-containing protein 13 isoform X1

    See identical proteins and their annotated locations for XP_005172884.1

    UniProtKB/TrEMBL
    A0A8M3B3W3, Q08C88
    Conserved Domains (2) summary
    cd09583
    Location:23 → 91
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    smart00454
    Location:23 → 79
    SAM; Sterile alpha motif
Nucleotide Protein Strain
Heading Accession and Version

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