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    CNBP CCHC-type zinc finger, nucleic acid binding protein [ Homo sapiens (human) ]

    Gene ID: 7555, updated on 22-May-2013
    Official Symbol
    CNBPprovided by HGNC
    Official Full Name
    CCHC-type zinc finger, nucleic acid binding proteinprovided by HGNC
    Primary source
    HGNC:13164
    See related
    HPRD:00311; MIM:116955
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DM2; ZNF9; CNBP1; PROMM; RNF163; ZCCHC22
    Summary
    This gene encodes a nucleic-acid binding protein with seven zinc-finger domains. The protein has a preference for binding single stranded DNA and RNA. The protein functions in cap-independent translation of ornithine decarboxylase mRNA, and may also function in sterol-mediated transcriptional regulation. A CCTG expansion in the first intron of this gene results in myotonic dystrophy type 2. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
    Location :
    3q21
    Sequence :
    Chromosome: 3; NC_000003.11 (128886658..128902810, complement)
    See CNBP in Epigenomics, MapViewer

    Chromosome 3 - NC_000003.11Genomic Context describing neighboring genes Neighboring gene ISY1-RAB43 readthrough Neighboring gene RAB43, member RAS oncogene family Neighboring gene ISY1 splicing factor homolog (S. cerevisiae) Neighboring gene ribosomal protein S27 pseudogene 12 Neighboring gene coatomer protein complex, subunit gamma 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Myotonic dystrophy type 2

    Summary from GeneReviews: Myotonic Dystrophy Type 2 Go to GeneReviews

    Disease Characteristics
    Myotonic dystrophy type 2 (DM2) is characterized by myotonia (90% of affected individuals) and muscle dysfunction (weakness, pain, and stiffness) (82%), and less commonly by cardiac conduction defects, iridescent posterior subcapsular cataracts, insulin insensitive type 2 diabetes mellitus, and testicular failure. Although myotonia (involuntary muscle contraction with delayed relaxation) has been reported during the first decade, onset is typically in the third decade, most commonly with fluctuating or episodic muscle pain that can be debilitating and weakness of the neck flexors and finger flexors. Subsequently, weakness occurs in the elbow extensors and the hip flexors and extensors. Facial weakness and weakness of the ankle dorsiflexors are less common. Myotonia rarely causes severe symptoms.
    Diagnosis Testing
    CNBP (ZNF9) is the only gene known to be associated with myotonic dystrophy type 2. CNBP intron 1 contains a complex repeat motif, (TG)n(TCTG)n(CCTG)n. Expansion of the CCTG repeat causes DM2. The number of CCTG repeats in expanded alleles ranges from approximately 75 to more than 11,000, with a mean of approximately 5000 repeats. The detection rate of a CNBP CCTG expansion is more than 99% with the combination of routine PCR, Southern blot analysis, and the "PCR repeat assay."
    Genetic Counseling
    Myotonic dystrophy type 2 is inherited in an autosomal dominant manner. To date, all individuals whose biological parents have been evaluated with molecular genetic testing have had one parent with a CNBP gene expansion; de novo mutations have not been reported. Each child of an individual with a CNBP expansion has a 50% chance of inheriting the expansion. Neither the size of a predominant allele nor the total number of different detectable expansions in a single sample can predict disease severity, age of onset, or clinical symptoms. Prenatal testing for pregnancies at 50% risk is possible when the presence of a CNBP expansion has been identified in the affected parent.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    P62633 Q15366 PCBP2    HPRD  PubMed  
    BioGRID:113387 BioGRID:118162 APOBEC3C    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:120586 BRIX1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:118793 BZW2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:198782 Cnbp    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:113587 DAP3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:108040 DFFA    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:108025 DHX9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:116166 EBNA1BP2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:109898 EIF6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:108390 ERH    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:116175 FERMT2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:108512 FKTN    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:113387 BioGRID:128670 HNRNPA3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:109423 HNRNPAB    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:109424 HNRNPC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:115530 HNRNPR    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:116281 HNRNPUL1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:109545 HSPA9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:115886 IGF2BP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:115887 IGF2BP3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:109883 ITGA4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:109954 KCND3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113387 BioGRID:110707 MYH4    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:113387 BioGRID:211970 Mis12    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:111221 PFAS    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:111772 PURA    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:118134 RBMX    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:112039 RPA3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:112067 RPL23A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:112042 RPL3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:112079 RPL31    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:112083 RPL34    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:112084 RPL35A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:117388 RPL36    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:112131 RPS16    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:112137 RPS19    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:112103 RPS3A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:117587 RSL1D1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:115755 SYNCRIP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:113255 VCAM1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113387 BioGRID:116303 ZWINT    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • FLJ11631

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding transcription factor activity TAS
    Traceable Author Statement
    more info
    PubMed 
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cholesterol biosynthetic process TAS
    Traceable Author Statement
    more info
    PubMed 
    positive regulation of cell proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of transcription from RNA polymerase II promoter ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of transcription, DNA-dependent ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of transcription, DNA-dependent TAS
    Traceable Author Statement
    more info
    PubMed 
    transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    endoplasmic reticulum ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    NOT nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    cellular nucleic acid-binding protein
    Names
    cellular nucleic acid-binding protein
    zinc finger protein 273
    erythroid differentiation-related
    cellular nucleic acid binding protein
    sterol regulatory element-binding protein
    zinc finger protein 9 (a cellular retroviral nucleic acid binding protein)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011902.1 RefSeqGene

      Range
      5001..21153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001127192.1NP_001120664.1  cellular nucleic acid-binding protein isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AC108673, AK292119, BU616793, DB027227
      Consensus CDS
      CCDS46906.1
      UniProtKB/Swiss-Prot
      P62633
      Conserved Domains (1) summary
      PTZ00368
      Location:54173
      Blast Score: 241
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    2. NM_001127193.1NP_001120665.1  cellular nucleic acid-binding protein isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant, also known as alpha variant 1, uses an alternate in-frame splice site in the central coding region, compared to variant 1, resulting in a shorter protein (isoform 2).
      Source sequence(s)
      AC108673, BU616793, DB027227, DQ091187
      Consensus CDS
      CCDS46907.1
      UniProtKB/Swiss-Prot
      P62633
      Conserved Domains (1) summary
      PTZ00368
      Location:54172
      Blast Score: 236
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    3. NM_001127194.1NP_001120666.1  cellular nucleic acid-binding protein isoform 4

      Status: REVIEWED

      Description
      Transcript Variant: This variant, also known as beta variant 2, uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in a shorter protein (isoform 4).
      Source sequence(s)
      AC108673, BU616793, DA606481, DB027227, DQ092367
      Consensus CDS
      CCDS46908.1
      UniProtKB/Swiss-Prot
      P62633
      Conserved Domains (1) summary
      PTZ00368
      Location:47166
      Blast Score: 238
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    4. NM_001127195.1NP_001120667.1  cellular nucleic acid-binding protein isoform 5

      Status: REVIEWED

      Description
      Transcript Variant: This variant, also known as beta variant 1, uses two alternate in-frame splice sites in the 5' and central coding regions, compared to variant 1, resulting in a shorter protein (isoform 5).
      Source sequence(s)
      AC108673, BU616793, DB027227, DQ092366
      UniProtKB/TrEMBL
      Q4JGY1
      Conserved Domains (2) summary
      PTZ00368
      Location:47165
      Blast Score: 233
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      cl15298
      Location:90107
      Blast Score: 72
      zf-CCHC; Zinc knuckle
    5. NM_001127196.1NP_001120668.1  cellular nucleic acid-binding protein isoform 6

      Status: REVIEWED

      Description
      Transcript Variant: This variant uses two alternate in-frame splice sites in the 5' and central coding regions, compared to variant 1, resulting in a shorter protein (isoform 6).
      Source sequence(s)
      AC108673, BC014911, BU616793, DB027227
      Consensus CDS
      CCDS54637.1
      UniProtKB/Swiss-Prot
      P62633
      Conserved Domains (1) summary
      PTZ00368
      Location:47164
      Blast Score: 234
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    6. NM_003418.4NP_003409.1  cellular nucleic acid-binding protein isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant uses an alternate in-frame splice site in the central coding region, compared to variant 1, resulting in a shorter protein (isoform 3).
      Source sequence(s)
      AC108673, BC093058, BU616793, DB027227
      Consensus CDS
      CCDS3056.1
      UniProtKB/Swiss-Prot
      P62633
      Conserved Domains (1) summary
      PTZ00368
      Location:54171
      Blast Score: 236
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000003.11 Reference GRCh37.p10 Primary Assembly

      Range
      128886658..128902810, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000135.1 Alternate HuRef

      Range
      126273037..126289092, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018914.1 Alternate CHM1_1.0

      Range
      128870119..128886364, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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