Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    XPC xeroderma pigmentosum, complementation group C [ Homo sapiens (human) ]

    Gene ID: 7508, updated on 16-Jun-2013
    Official Symbol
    XPCprovided by HGNC
    Official Full Name
    xeroderma pigmentosum, complementation group Cprovided by HGNC
    Primary source
    HGNC:12816
    See related
    Ensembl:ENSG00000154767; HPRD:02046; MIM:613208; Vega:OTTHUMG00000155526
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    XP3; RAD4; XPCC
    Summary
    This gene encodes a component of the nucleotide excision repair (NER) pathway. There are multiple components involved in the NER pathway, including Xeroderma pigmentosum (XP) A-G and V, Cockayne syndrome (CS) A and B, and trichothiodystrophy (TTD) group A, etc. This component, XPC, plays an important role in the early steps of global genome NER, especially in damage recognition, open complex formation, and repair protein complex formation. Mutations in this gene or some other NER components result in Xeroderma pigmentosum, a rare autosomal recessive disorder characterized by increased sensitivity to sunlight with the development of carcinomas at an early age. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Mar 2009]
    Location :
    3p25
    Sequence :
    Chromosome: 3; NC_000003.11 (14186647..14220172, complement)

    Chromosome 3 - NC_000003.11Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 4 Neighboring gene transmembrane protein 43 Neighboring gene LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) Neighboring gene solute carrier family 6 (neurotransmitter transporter, taurine), member 6 Neighboring gene glutamate receptor interacting protein 2

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Xeroderma pigmentosum, group C

    Summary from GeneReviews: Xeroderma Pigmentosum Go to GeneReviews

    Disease Characteristics
    Xeroderma pigmentosum (XP) is characterized by sun sensitivity (severe sunburn with blistering, persistent erythema on minimal sun exposure, marked freckle-like pigmentation of the face before age two years), ocular involvement (photophobia, keratitis, atrophy of the skin of the lids), and a greatly increased risk of cutaneous neoplasms (basal cell carcinoma, squamous cell carcinoma, melanoma). Approximately 25% of affected individuals have neurologic manifestations (acquired microcephaly, diminished or absent deep tendon stretch reflexes, progressive sensorineural hearing loss, and progressive cognitive impairment). The most common causes of death are skin cancer, neurologic degeneration, and internal cancer. The median age at death in persons with XP with neurodegeneration (29 years) was found to be younger than that in persons with XP without neurodegeneration (37 years).
    Diagnosis Testing
    The diagnosis of XP is made on the basis of clinical findings and family history. The preferred method of laboratory diagnosis is functional testing to screen cells for abnormalities in DNA repair. XP has been classified by complementation group (XP-A, XP-B, XP-C, XP-D, XP-E, XP-F, XP-G) based on research laboratory testing. The XP complementation groups are associated with biallelic mutations in XPA, ERCC1, ERCC3 (XP-B), XPC, ERCC2 (XP-D), DDB2 (XP-E), ERCC4 (XP-F), and ERCC5 (XP-G). In addition XP is associated with mutations in POLH.
    Genetic Counseling
    XP is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. If the disease-causing mutations have been identified in the family, carrier testing for at-risk family members and prenatal testing for pregnancies at increased risk are possible through laboratories offering either testing for the gene of interest or custom testing.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    NP_004619.2 NP_000098.1 DDB2    BIND  PubMed DDB2 interacts with XPC. This interaction was modeled on a demonstrated interaction between human DDB2 and hamster XPC. 
    Q01831 P41208 CETN2    HPRD  PubMed  
    Q01831 Q92466 DDB2    HPRD  PubMed  
    Q01831 P19447 ERCC3    HPRD  PubMed  
    Q01831 P32780 GTF2H1    HPRD  PubMed  
    Q01831 P62310 LSM3    HPRD  PubMed  
    Q01831 P54725 RAD23A    HPRD  PubMed  
    Q01831 P54727 RAD23B    HPRD  PubMed  
    Q01831 Q15797 SMAD1    HPRD  PubMed  
    Q01831 Q13569 TDG    HPRD  PubMed  
    Q01831 Q01831 XPC    HPRD  PubMed  
    BioGRID:113345 BioGRID:106537 ABCA1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:113345 BioGRID:106962 ATM    BioGRID  PubMed Co-localization 
    BioGRID:113345 BioGRID:107027 ATR    BioGRID  PubMed Co-localization 
    BioGRID:113345 BioGRID:114342 BANF1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113345 BioGRID:107496 CETN2    BioGRID  PubMed Affinity Capture-Western; Co-fractionation; Co-purification; Reconstituted Complex 
    BioGRID:113345 BioGRID:115349 CHAF1A    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113345 BioGRID:119904 CHRAC1    BioGRID  PubMed Co-fractionation 
    BioGRID:113345 BioGRID:204930 Cetn2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113345 BioGRID:108009 DDB1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113345 BioGRID:108010 DDB2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:113345 BioGRID:108383 ERCC3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:113345 BioGRID:109220 GTF2H1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113345 BioGRID:109268 H2AFX    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113345 BioGRID:109389 HMGB1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:113345 BioGRID:118105 LSM3    BioGRID  PubMed Two-hybrid 
    BioGRID:113345 BioGRID:110368 MECP2    BioGRID  PubMed Co-fractionation 
    BioGRID:113345 BioGRID:111456 POU5F1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113345 BioGRID:111823 RAD23A    BioGRID  PubMed Co-fractionation; Reconstituted Complex; Two-hybrid 
    BioGRID:113345 BioGRID:111824 RAD23B    BioGRID  PubMed Affinity Capture-Western; Co-fractionation; Co-purification; Reconstituted Complex; Two-hybrid 
    BioGRID:113345 BioGRID:112037 RPA1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:113345 BioGRID:110261 SMAD1    BioGRID  PubMed Two-hybrid 
    BioGRID:113345 BioGRID:112482 SMARCB1    BioGRID  PubMed Affinity Capture-Western; Co-localization 
    BioGRID:113345 BioGRID:113188 SUMO1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113345 BioGRID:112497 SUMO2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113345 BioGRID:113008 TOP2B    BioGRID  PubMed Co-fractionation 
    BioGRID:113345 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:113345 BioGRID:115566 UBE4B    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113345 BioGRID:113866 USP11    BioGRID  PubMed Co-fractionation 
    BioGRID:113345 BioGRID:120440 WRAP53    BioGRID  PubMed Co-fractionation 
    BioGRID:113345 BioGRID:113344 XPA    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113345 BioGRID:122795 ZCCHC6    BioGRID  PubMed Co-fractionation 
    BioGRID:113345 BioGRID:121543 ZNF512B    BioGRID  PubMed Two-hybrid 
    • DNA Damage Recognition in GG-NER, organism-specific biosystem (from REACTOME)
      DNA Damage Recognition in GG-NER, organism-specific biosystemSeveral subunits of the NER multiprotein repair machinery are required for the recognition of damage in DNA. Mainly, XPC, HR23B, XPA and RPA are implicated in this process. XPA and RPA are thought to...
    • DNA Repair, organism-specific biosystem (from REACTOME)
      DNA Repair, organism-specific biosystemDNA repair is a phenomenal multi-enzyme, multi-pathway system required to ensure the integrity of the cellular genome. These cellular mechanisms that must cope with the plethora of DNA base pair ad...
    • Dual incision reaction in GG-NER, organism-specific biosystem (from REACTOME)
      Dual incision reaction in GG-NER, organism-specific biosystemDual incision at defined positions flanking the DNA damage is carried out by XPG (3' -incision) and ERCC1-XPF (5'-incision) complex. The resulting excised fragment is ~27-30 bp long and contains the...
    • Formation of incision complex in GG-NER, organism-specific biosystem (from REACTOME)
      Formation of incision complex in GG-NER, organism-specific biosystemBinding of XPC complex to the damaged site on the DNA substrate is followed by XPA and RPA recruitment. XPA is a metalloprotein that binds to different types of DNA damage. Binding of RPA, or Replic...
    • Global Genomic NER (GG-NER), organism-specific biosystem (from REACTOME)
      Global Genomic NER (GG-NER), organism-specific biosystemGG-NER is considered to be transcription-independent, removing lesions from non-transcribed regions of genome in addition to non-transcribed strands of transcribed regions. The three events that char...
    • Nucleotide Excision Repair, organism-specific biosystem (from REACTOME)
      Nucleotide Excision Repair, organism-specific biosystemNER was first described in the model organism E. coli in the early 1960s as a process whereby bulky base damage is enzymatically removed from DNA, facilitating the recovery of DNA synthesis and cell ...
    • Nucleotide excision repair, organism-specific biosystem (from KEGG)
      Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
    • Nucleotide excision repair, conserved biosystem (from KEGG)
      Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    bubble DNA binding TAS
    Traceable Author Statement
    more info
    PubMed 
    damaged DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    loop DNA binding TAS
    Traceable Author Statement
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA repair TAS
    Traceable Author Statement
    more info
     
    cell cycle checkpoint IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    intra-S DNA damage checkpoint IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide-excision repair IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleotide-excision repair TAS
    Traceable Author Statement
    more info
     
    nucleotide-excision repair, DNA damage recognition IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleotide-excision repair, DNA damage recognition TAS
    Traceable Author Statement
    more info
     
    nucleotide-excision repair, DNA damage removal TAS
    Traceable Author Statement
    more info
     
    response to UV-B IEA
    Inferred from Electronic Annotation
    more info
     
    response to drug IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    XPC complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    DNA repair protein complementing XP-C cells
    Names
    DNA repair protein complementing XP-C cells
    p125
    mutant xeroderma pigmentosum group C

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011763.1 RefSeqGene

      Range
      5001..38526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_472

    mRNA and Protein(s)

    1. NM_001145769.1NP_001139241.1  DNA repair protein complementing XP-C cells isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an internal segment in the CDS, as compared to variant 1. The reading frame is not changed, and the resulting isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AI091587, AK222844, AK295711, D21089
      Consensus CDS
      CCDS46764.1
      UniProtKB/Swiss-Prot
      Q01831
      Conserved Domains (5) summary
      TIGR00605
      Location:136830
      Blast Score: 2073
      rad4; DNA repair protein rad4
      smart01030
      Location:593644
      Blast Score: 192
      BHD_1; Rad4 beta-hairpin domain 1
      smart01032
      Location:714788
      Blast Score: 372
      BHD_3; Rad4 beta-hairpin domain 3
      pfam03835
      Location:478589
      Blast Score: 328
      Rad4; Rad4 transglutaminase-like domain
      pfam10404
      Location:647707
      Blast Score: 210
      BHD_2; Rad4 beta-hairpin domain 2
    2. NM_004628.4NP_004619.3  DNA repair protein complementing XP-C cells isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AI091587, AK222844, D21089
      Consensus CDS
      CCDS46763.1
      UniProtKB/Swiss-Prot
      Q01831
      Related
      ENSP00000285021, OTTHUMP00000218039, ENST00000285021, OTTHUMT00000340517
      Conserved Domains (5) summary
      TIGR00605
      Location:147867
      Blast Score: 2148
      rad4; DNA repair protein rad4
      smart01030
      Location:630681
      Blast Score: 192
      BHD_1; Rad4 beta-hairpin domain 1
      smart01032
      Location:751825
      Blast Score: 372
      BHD_3; Rad4 beta-hairpin domain 3
      pfam03835
      Location:515626
      Blast Score: 328
      Rad4; Rad4 transglutaminase-like domain
      pfam10404
      Location:684744
      Blast Score: 209
      BHD_2; Rad4 beta-hairpin domain 2

    RNA

    1. NR_027299.1 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant lacks an internal exon, which results in frame-shift and an upstream stop codon, as compared to variant 1. The transcript is a nonsense-mediated mRNA decay (NMD) candidate, and is unlikely to make a functional protein.
      Source sequence(s)
      AI091587, AK222844, AK311039, D21089

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000003.11 Reference GRCh37.p10 Primary Assembly

      Range
      14186647..14220172, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000135.1 Alternate HuRef

      Range
      14121624..14155151, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018914.1 Alternate CHM1_1.0

      Range
      14122244..14155768, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...