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LOC7479888 agamous-like MADS-box protein AGL62 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7479888, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7479888
Gene description
agamous-like MADS-box protein AGL62
Locus tag
POPTR_008G041500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (2338347..2339197)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (2366854..2368026)

Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7457875 Neighboring gene MLO-like protein 6 Neighboring gene tetraspanin-6 Neighboring gene serine carboxypeptidase-like 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL62

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    2338347..2339197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002311066.3 → XP_002311102.1  agamous-like MADS-box protein AGL62

    See identical proteins and their annotated locations for XP_002311102.1

    UniProtKB/TrEMBL
    B9HLM7
    Conserved Domains (1) summary
    cl00109
    Location:22 → 79
    MADS; MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ ...
Nucleotide Protein
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