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LOC7477193 two-component response regulator ARR2 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7477193, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7477193
Gene description
two-component response regulator ARR2
Locus tag
POPTR_010G001000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (115175..119326)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 10 NC_037294.1 (115011..119197)

Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 4 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene COBRA-like protein 7 Neighboring gene leucine-rich repeat extensin-like protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two-component response regulator ARR2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    115175..119326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024610938.2 → XP_024466706.1  two-component response regulator ARR2 isoform X3

    UniProtKB/TrEMBL
    A0A2K1YLL6, A0A3N7FP39
    Conserved Domains (2) summary
    TIGR01557
    Location:208 → 261
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00156
    Location:30 → 142
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

  2. XM_024610936.2 → XP_024466704.1  two-component response regulator ARR2 isoform X2

    UniProtKB/TrEMBL
    A0A2K1YLL1, A0A3N7FP39
    Conserved Domains (2) summary
    TIGR01557
    Location:208 → 261
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00156
    Location:30 → 142
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

  3. XM_024610939.2 → XP_024466707.1  two-component response regulator ARR2 isoform X4

    UniProtKB/TrEMBL
    A0A2K1YLL0, A0A3N7FP39
    Conserved Domains (2) summary
    TIGR01557
    Location:208 → 261
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00156
    Location:30 → 142
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

  4. XM_024610935.2 → XP_024466703.1  two-component response regulator ARR2 isoform X1

    UniProtKB/TrEMBL
    A0A2K1YLL3, A0A3N7FP39
    Conserved Domains (2) summary
    TIGR01557
    Location:208 → 261
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00156
    Location:30 → 142
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
Nucleotide Protein
Heading Accession and Version

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