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SRR serine racemase [ Pan troglodytes (chimpanzee) ]

Gene ID: 747543, updated on 29-Mar-2024

Summary

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Official Symbol
SRRprovided by VGNC
Official Full Name
serine racemaseprovided by VGNC
Primary source
VGNC:VGNC:9655
Locus tag
CK820_G0046774
See related
Ensembl:ENSPTRG00000008546
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SRR in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 19 NC_072417.2 (12797712..12828459)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (1087258..1117740, complement)

Chromosome 19 - NC_072417.2Genomic Context describing neighboring genes Neighboring gene SMG6 nonsense mediated mRNA decay factor Neighboring gene uncharacterized LOC104002749 Neighboring gene uncharacterized LOC107969107 Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene TSR1 ribosome maturation factor Neighboring gene small G protein signaling modulator 2 Neighboring gene MAX network transcriptional repressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-serine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables threonine racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-serine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine racemase
XP_001156186.1
XP_009429841.1
XP_016786667.2
XP_016786668.1
XP_054525894.1
XP_063654250.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    12797712..12828459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001156186.7 → XP_001156186.1  serine racemase isoform X3

    See identical proteins and their annotated locations for XP_001156186.1

    UniProtKB/TrEMBL
    A0A2J8JKX2, A0A6D2Y0M4, H2QBV2
    Conserved Domains (1) summary
    cl00342
    Location:5 → 320
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

  2. XM_016931179.3 → XP_016786668.1  serine racemase isoform X4

  3. XM_063798180.1 → XP_063654250.1  serine racemase isoform X1

  4. XM_016931178.4 → XP_016786667.2  serine racemase isoform X2

  5. XM_009431566.4 → XP_009429841.1  serine racemase isoform X3

    See identical proteins and their annotated locations for XP_009429841.1

    UniProtKB/TrEMBL
    A0A2J8JKX2, A0A6D2Y0M4, H2QBV2
    Related
    ENSPTRP00000014588.3
    Conserved Domains (1) summary
    cl00342
    Location:5 → 320
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

  6. XM_054669919.2 → XP_054525894.1  serine racemase isoform X3

    UniProtKB/TrEMBL
    A0A2J8JKX2, A0A6D2Y0M4, H2QBV2
Nucleotide Protein
Heading Accession and Version

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