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LOC7467554 scarecrow-like protein 9 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7467554, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7467554
Gene description
scarecrow-like protein 9
Locus tag
POPTR_008G057400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7467554 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (3380575..3384210)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (3395754..3399457)

Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene DNA-damage-repair/toleration protein DRT111, chloroplastic Neighboring gene telomere repeat-binding protein 3 Neighboring gene protein FIZZY-RELATED 3 Neighboring gene uncharacterized LOC112328408

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scarecrow-like protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    3380575..3384210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024607303.2 → XP_024463071.1  scarecrow-like protein 9

    UniProtKB/TrEMBL
    A0A2K1ZCG1
    Conserved Domains (1) summary
    pfam03514
    Location:368 → 739
    GRAS; GRAS domain family

RNA

  1. XR_002983383.2 RNA Sequence

  2. XR_002983382.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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