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LOC7465102 scarecrow-like protein 30 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7465102, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7465102
Gene description
scarecrow-like protein 30
Locus tag
POPTR_001G242000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (25979034..25981613)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (25324579..25327131)

Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene scarecrow-like protein 33 Neighboring gene scarecrow-like protein 14 Neighboring gene uncharacterized LOC127904785 Neighboring gene scarecrow-like protein 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scarecrow-like protein 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    25979034..25981613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002299828.3 → XP_002299864.2  scarecrow-like protein 30

    UniProtKB/TrEMBL
    B9GJL7
    Conserved Domains (1) summary
    pfam03514
    Location:284 → 653
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version

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