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    POPTRDRAFT_816561 hypothetical protein [ Populus trichocarpa ]

    Gene ID: 7461714, updated on 12-Nov-2011
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    Summary

    Gene symbol
    POPTRDRAFT_816561
    Gene description
    hypothetical protein
    Locus tag
    POPTRDRAFT_816561
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Populus trichocarpa (gb-synonym: Populus balsamifera subsp. trichocarpa)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

    Sequence :
    Chromosome: LGII; NC_008468.1 (10962342..10964265)
    See POPTRDRAFT_816561 in MapViewer

    Chromosome LGII - NC_008468.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Tuskan GA, et al. Science, 2006 Sep 15. PMID 16973872.

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    General gene information

    Homology

    • Homologs of the POPTRDRAFT_816561 gene: The POPTRDRAFT_816561 gene is conserved in human, chimpanzee, dog, cow, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.pombe, S.cerevisiae, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, rice, and P.falciparum.

    Pathways from BioSystems

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    General protein information

    Names
    hypothetical protein
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    mRNA and Protein(s)

    1. XM_002301245.1 → XP_002301281.1  predicted protein [Populus trichocarpa]

      UniProtKB/TrEMBL
      A9PE08
      Conserved Domains (3) summary
      cd00353
      Location:70 – 145
      Blast Score: 203
      Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...
      PTZ00072
      Location:4 – 151
      Blast Score: 723
      PTZ00072; 40S ribosomal protein S13; Provisional
      pfam08069
      Location:1 – 60
      Blast Score: 291
      Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic EF146546.1 ABK94611.1
    genomic CM000338.1 EEE80554.1
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    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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