HOXA9 homeobox A9 [Pan troglodytes (chimpanzee)] - Gene

Summary

Gene symbol: HOXA9
Gene description: homeobox A9
See related: Ensembl:ENSPTRG00000047890 Ensembl:ENSPTRG00000049485
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human all
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Genomic context

Location:: chromosome: 6

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	6	NC_072404.2 (32966585..32969698, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	7	NC_072405.1 (30741135..30747740, complement)

Chromosome 6 - NC_072404.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH80175 (e-PCR)
- UniSTS:84531

ECD00028 (e-PCR)
- UniSTS:281142

Hoxa9 (e-PCR), detects polymorphism
- UniSTS:536646

HOXA9_991 (e-PCR)
- UniSTS:277318

HOXA9_V256 (e-PCR)
- UniSTS:277318

Hoxa9 (e-PCR), detects polymorphism
- UniSTS:468837

ECD00619 (e-PCR)
- UniSTS:281728

RH18061 (e-PCR)
- UniSTS:50049

stSG609368 (e-PCR)
- UniSTS:449457

stSG609369 (e-PCR)
- UniSTS:449458

stSG609371 (e-PCR)
- UniSTS:449460

ECD00415 (e-PCR)
- UniSTS:281526

REN100606 (e-PCR)
- UniSTS:425403

REN100607 (e-PCR)
- UniSTS:425404

REN100608 (e-PCR)
- UniSTS:425405

REN100609 (e-PCR)
- UniSTS:425406

REN100610 (e-PCR)
- UniSTS:425407

REN100611 (e-PCR)
- UniSTS:425408

REN100612 (e-PCR)
- UniSTS:425409

REN100613 (e-PCR)
- UniSTS:425410

REN100614 (e-PCR)
- UniSTS:425411

REN100615 (e-PCR)
- UniSTS:425412

REN100616 (e-PCR)
- UniSTS:425413

REN100617 (e-PCR)
- UniSTS:425414

REN100618 (e-PCR)
- UniSTS:425415

REN100619 (e-PCR)
- UniSTS:425416

REN100620 (e-PCR)
- UniSTS:425417

REN100623 (e-PCR)
- UniSTS:425420

REN100624 (e-PCR)
- UniSTS:425421

REN100626 (e-PCR)
- UniSTS:425423

REN100627 (e-PCR)
- UniSTS:425424

HOX1 (e-PCR)
- UniSTS:71932

Hoxa9 (e-PCR), detects polymorphism
- UniSTS:516607

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed
involved_in anterior/posterior pattern specification	IEA Inferred from Electronic Annotation more info	PubMed
involved_in embryonic skeletal system morphogenesis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in proximal/distal pattern formation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: homeobox protein Hox-A9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

32966585..32969698 complement

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GenBank, FASTA, Sequence Viewer (Graphics)