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THAPSDRAFT_28025 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451953, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_28025
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_28025
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012067.1 (1863294..1864400)

Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012067.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002289479.1
  • based on sequence similarity. contains heme binding site domain; putative protein of unknown function

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012067.1 Reference assembly

    Range
    1863294..1864400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289443.1 → XP_002289479.1  hypothetical protein THAPSDRAFT_28025 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289479.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C081
    Conserved Domains (3) summary
    cd01335
    Location:33 → 242
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    TIGR04167
    Location:22 → 341
    rSAM_SeCys; radical SAM/Cys-rich domain protein
    pfam12345
    Location:198 → 340
    DUF3641; Protein of unknown function (DUF3641)
Nucleotide Protein
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Molecular Biology Databases