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THAPS_263298 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450610, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_263298
Gene description
hypothetical protein
Locus tag
THAPS_263298
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_012070.1 (1859663..1861414, complement)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall chitin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002296345.1
  • Putatively involved in the synthesis of chitin, a polymer of 4-linked N-acetyl-beta-glucosamine: UDP-acetyl-glucosamine is presumably the GlcNAc donor.; chitin-UDP acetyl-glucosaminyl transferase; containing domain with similarity to chitin synthase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    1859663..1861414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296309.1 → XP_002296345.1  hypothetical protein THAPS_263298, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296345.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YNX7
    Conserved Domains (3) summary
    cd04190
    Location:132 → 463
    Chitin_synth_C; C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin
    TIGR04242
    Location:113 → 575
    nodulat_NodC; chitooligosaccharide synthase NodC
    cl02041
    Location:1 → 75
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain
Nucleotide Protein
Heading Accession and Version

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